View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17820_low_3 (Length: 344)

Name: NF17820_low_3
Description: NF17820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17820_low_3
NF17820_low_3
[»] chr8 (2 HSPs)
chr8 (1-337)||(16340432-16340769)
chr8 (5-204)||(1336238-1336443)
[»] scaffold0245 (1 HSPs)
scaffold0245 (1-140)||(7990-8133)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-140)||(8318-8461)
[»] chr1 (3 HSPs)
chr1 (1-140)||(1282310-1282453)
chr1 (1-140)||(1283341-1283484)
chr1 (1-140)||(46396443-46396587)
[»] chr4 (4 HSPs)
chr4 (1-101)||(26333107-26333207)
chr4 (4-101)||(47551937-47552034)
chr4 (158-205)||(47551722-47551769)
chr4 (153-199)||(47551835-47551881)
[»] chr3 (3 HSPs)
chr3 (1-140)||(44441732-44441876)
chr3 (1-98)||(54393201-54393298)
chr3 (153-205)||(54393105-54393157)
[»] chr5 (2 HSPs)
chr5 (42-141)||(15810889-15810993)
chr5 (112-141)||(15727119-15727148)
[»] chr6 (1 HSPs)
chr6 (53-141)||(33106705-33106798)
[»] chr2 (1 HSPs)
chr2 (45-101)||(42071525-42071581)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 16340432 - 16340769
Alignment:
Q  1 aaccagtcatctccgatttgatttcacatctacttcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16340432 aaccagtcatctccgatttgatttcacatctaattcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaattatttgtgataagt 16340531  T
Q  101 gcagaccatgt-----aaatgtcaactattgatacattatactactnnnnnnnnttatttctaaaaactttgtatggccacaagcccacaaactctataa 195  Q
    | |||||||||     ||||||||||||||||||||||||||||||        ||||||||||||||||||| | ||||||||||| ||||||||||||    
T  16340532 gtagaccatgtggctaaaatgtcaactattgatacattatactact-aaaaaaattatttctaaaaactttgtgtagccacaagcccgcaaactctataa 16340630  T
Q  196 catgcatccgcccttgatcacggtccacctatnnnnnnnnnnnttaatttcttttatagaggaagttattcaaatattatcttgtgacctattctttttt 295  Q
    | |||||||||||||||||||  |||||||||           ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |    
T  16340631 cgtgcatccgcccttgatcacaatccacctat--aaaaaaatattaattt-ttttatagaggaagttattcaaatattgtcttgtggcctattcttttct 16340727  T
Q  296 ccattttaatacattttactatcatactttcatatcactcga 337  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  16340728 ccatttcaatacattttactatcatactttcaaatcactcga 16340769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 204
Target Start/End: Original strand, 1336238 - 1336443
Alignment:
Q  5 agtcatctccgatttgatttcacatctacttcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagtgcag 104  Q
    ||||||| |||| ||| |||| |||| | || ||||||||||||| |||||||||| |||||||||||| ||||| ||||||  |||||||||||||  |    
T  1336238 agtcatccccgacttgttttctcatccaatttttaataatagtttgagatatatgatgataagtgtgggccaagagagaaatgttttgtgataagtgtgg 1336337  T
Q  105 accatgt-----aaatgtcaactattgatac-attatactactnnnnnnnnttatttctaaaaactttgtatggccacaagcccacaaactctataacat 198  Q
      |||||     ||||||||||||||||||| ||||||||||         || |||||||||||||||| ||| ||||||||||||| ||||  |||||    
T  1336338 ttcatgtgatcaaaatgtcaactattgatacaattatactaccaaaaaaaattgtttctaaaaactttgtgtgggcacaagcccacaagctctccaacat 1336437  T
Q  199 gcatcc 204  Q
    ||||||    
T  1336438 gcatcc 1336443  T

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Target: scaffold0245 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 7990 - 8133
Alignment:
Q  1 aaccagtcatctccgatttgatttcacatctacttcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagt 100  Q
    ||||||||||| || | |||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  7990 aaccagtcatcccctacttgatttcgcatctaattcttaataatagtttgagatatatgacgacaagtgtgggccaagatagaaatgatttgtgataagt 8089  T
Q  101 gcagaccatgt----aaatgtcaactattgatacattatactac 140  Q
    |     |||||    |||||||||||||| ||||||||||||||    
T  8090 gtgattcatgtgatcaaatgtcaactattaatacattatactac 8133  T

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Target: scaffold0229 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 8318 - 8461
Alignment:
Q  1 aaccagtcatctccgatttgatttcacatctacttcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagt 100  Q
    ||||||||||| || | |||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  8318 aaccagtcatcccctacttgatttcgcatctaattcttaataatagtttgagatatatgacgacaagtgtgggccaagatagaaatgatttgtgataagt 8417  T
Q  101 gcagaccatgt----aaatgtcaactattgatacattatactac 140  Q
    |     |||||    |||||||||||||| ||||||||||||||    
T  8418 gtgattcatgtgatcaaatgtcaactattaatacattatactac 8461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 1282310 - 1282453
Alignment:
Q  1 aaccagtcatctccgatttgatttcacatctacttcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagt 100  Q
    ||||||||||| || | |||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  1282310 aaccagtcatcccctacttgatttcgcatctaattcttaataatagtttgagatatatgacgacaagtgtgggccaagatagaaatgatttgtgataagt 1282409  T
Q  101 gcagaccatgt----aaatgtcaactattgatacattatactac 140  Q
    |     |||||    |||||||||||||| ||||||||||||||    
T  1282410 gtgattcatgtgatcaaatgtcaactattaatacattatactac 1282453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 1283341 - 1283484
Alignment:
Q  1 aaccagtcatctccgatttgatttcacatctacttcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagt 100  Q
    ||||||||||| || | |||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  1283341 aaccagtcatcccctacttgatttcgcatctaattcttaataatagtttgagatatatgacgacaagtgtgggccaagatagaaatgatttgtgataagt 1283440  T
Q  101 gcagaccatgt----aaatgtcaactattgatacattatactac 140  Q
    |     |||||    |||||||||||||| ||||||||||||||    
T  1283441 gtgattcatgtgatcaaatgtcaactattaatacattatactac 1283484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 46396587 - 46396443
Alignment:
Q  1 aaccagtcatctccgatttgatttcacatctacttcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagt 100  Q
    ||||||||||| || | |||||||| |||||| || ||||||||||||| |||||||||| |||||||||||| ||||| |||||| |||| ||||||||    
T  46396587 aaccagtcatcccctacttgatttcgcatctaattgttaataatagtttgagatatatgatgataagtgtgggccaagagagaaatgatttctgataagt 46396488  T
Q  101 gcagaccatgt-----aaatgtcaactattgatacattatactac 140  Q
    |    ||||||     |||||||||||||||||||||||||||||    
T  46396487 gtgatccatgtgatcaaaatgtcaactattgatacattatactac 46396443  T

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Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26333207 - 26333107
Alignment:
Q  1 aaccagtcatctccgatttgatttcacatctacttcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagt 100  Q
    ||||||||||| || | ||||||||||||||| ||||||| |||||||| ||||||||||  ||||||||||| ||||| |||||||||||||| |||||    
T  26333207 aaccagtcatcccctacttgatttcacatctaattcttaacaatagtttgagatatatgataataagtgtgggccaagagagaaataatttgtggtaagt 26333108  T
Q  101 g 101  Q
    |    
T  26333107 g 26333107  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 47552034 - 47551937
Alignment:
Q  4 cagtcatctccgatttgatttcacatctacttcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagtg 101  Q
    ||||||||||||| ||||||||  ||| | || || |||||||||| |||||| ||| |||||||| ||| ||||| |||||| ||||||||||||||    
T  47552034 cagtcatctccgacttgatttcgtatccaatttttcataatagtttgagatatttgatgataagtgcgggccaagaaagaaatgatttgtgataagtg 47551937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 47551769 - 47551722
Alignment:
Q  158 aaaaactttgtatggccacaagcccacaaactctataacatgcatccg 205  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  47551769 aaaaactttgtgtgggcacaagcccacaaactctacaacatgcatccg 47551722  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 47551881 - 47551835
Alignment:
Q  153 tttctaaaaactttgtatggccacaagcccacaaactctataacatg 199  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  47551881 tttctaaaaactttgtgtgggcacaagcccacaaactctacaacatg 47551835  T

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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 44441732 - 44441876
Alignment:
Q  1 aaccagtcatctccgatttgatttcacatctacttcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagt 100  Q
    ||||| ||||| || | |||||||| |||||| || ||||||||||||| |||||||||| |||||||||| | ||||| |||||| |||||||||||||    
T  44441732 aaccaatcatcccctacttgatttcgcatctaattgttaataatagtttgagatatatgatgataagtgtgcgccaagagagaaatgatttgtgataagt 44441831  T
Q  101 gcagaccatgt-----aaatgtcaactattgatacattatactac 140  Q
    |    ||||||     |||||||||||||||||||||||||||||    
T  44441832 gtgatccatgtgatcaaaatgtcaactattgatacattatactac 44441876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 54393298 - 54393201
Alignment:
Q  1 aaccagtcatctccgatttgatttcacatctacttcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataa 98  Q
    |||| ||||||||||| ||||||||  ||| |  ||||||||||||||| |||||||||| ||||||| | |||||||| | |||| |||||||||||    
T  54393298 aaccggtcatctccgacttgatttcgtatccaaatcttaataatagtttgagatatatgatgataagtatcggtcaagagataaattatttgtgataa 54393201  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 54393157 - 54393105
Alignment:
Q  153 tttctaaaaactttgtatggccacaagcccacaaactctataacatgcatccg 205  Q
    |||||||||||||||| | | |||||||||||||||| || ||||||||||||    
T  54393157 tttctaaaaactttgtgtcggcacaagcccacaaactatacaacatgcatccg 54393105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 15810889 - 15810993
Alignment:
Q  42 aatagttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagtgcagaccatgt-----aaatgtcaactattgatacattata 136  Q
    |||| ||| |||||||||| ||||  |||||| ||| | | ||||||||||||||||||| ||||| |||     |||||| ||||||||||||||||||    
T  15810889 aataatttgagatatatgatgatatatgtgggccaaaagaaaaataatttgtgataagtgtagaccgtgtggtcaaaatgtgaactattgatacattata 15810988  T
Q  137 ctact 141  Q
    |||||    
T  15810989 ctact 15810993  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 15727119 - 15727148
Alignment:
Q  112 aaatgtcaactattgatacattatactact 141  Q
    ||||||||||||||||||||||||||||||    
T  15727119 aaatgtcaactattgatacattatactact 15727148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 33106798 - 33106705
Alignment:
Q  53 atatatgacgataagtgtgggtcaagatagaaataatttgtgataagtgcagaccatgt-----aaatgtcaactattgatacattatactact 141  Q
    ||||||||| ||| |||| || ||||| |||||||||||||||||||||   | ||| |     ||||||||||||||||||||||||||||||    
T  33106798 atatatgactatatgtgtaggccaagagagaaataatttgtgataagtgtgaatcatatggtcaaaatgtcaactattgatacattatactact 33106705  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 42071525 - 42071581
Alignment:
Q  45 agttttagatatatgacgataagtgtgggtcaagatagaaataatttgtgataagtg 101  Q
    ||||| |||||||||| |||| ||||||  ||||| |||||| ||||||||||||||    
T  42071525 agtttgagatatatgatgataggtgtggaccaagagagaaatgatttgtgataagtg 42071581  T

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