View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_high_1 (Length: 881)
Name: NF17821_high_1
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 1 - 766
Target Start/End: Complemental strand, 13022501 - 13021734
Alignment:
| Q |
1 |
gtagacaccgctaagagtttaagaaaatgaaatcactgaatgaaactacttgtgttgatgtcgtgatagacaataagatttactaccatacctcctaaat |
100 |
Q |
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| T |
13022501 |
gtagacaccgctaagagtttaagaaaatgaaatcactgaatgaaactacttgtgttgatgtcgtgatagacaataagatttactaccatacctcctaaat |
13022402 |
T |
|
| Q |
101 |
tcttcacttttgctgatggccacataatcaacatgtctcctatcttcagaagcataagactcaagaatggcatacataatcttggtaagtctatcacaaa |
200 |
Q |
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| T |
13022401 |
tcttcacttttgctgatggccacataatcaacatgtctcctatcttcagaagcataagactcaagaatggcatacataatcttggtaagtctatcacaaa |
13022302 |
T |
|
| Q |
201 |
ctgcagctgcacttttcggttcactatcatctgtagcaccacggaaattgaaacattttgagataaacggttcatgttcaaggaatcgatagaagtgatt |
300 |
Q |
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| T |
13022301 |
ctgcagctgcacttttcggttcactatcatttgtagcaccccggaaattgaaacattttgagataaacggttcatgttcaaggaatcgatagaagtgatt |
13022202 |
T |
|
| Q |
301 |
tccctcctcaaaaccattttccctacatcaaatagttgagaatgacaagaaaattaatcaaggactattgcttaaaaacattttgtagctttctttggtt |
400 |
Q |
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| T |
13022201 |
tccctcctcaaaaccattttccctaaatcaaatagttgagaatgacaagaaaattaatcaaggactattgcttaaaaacattttgtagctttctttggtt |
13022102 |
T |
|
| Q |
401 |
tcagaagttattttcttacccgaaaacaggatggatgaagtgcttcttgcataactgttttccaacctcaacagcctaagcatttgttttggaatgaaaa |
500 |
Q |
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| T |
13022101 |
tcaaaagttattttcttacccgaaaacaggatggatgaagtgcttcttgcataactgttttccaacctcaacagcctaagcatttgttttggaatgaaaa |
13022002 |
T |
|
| Q |
501 |
tcatttaggcgaaagattatagttaaagaaacataatttgggaacaatgtttgaaattgtaaaactaattaaaaaatgtaacatattcagaatctataag |
600 |
Q |
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| T |
13022001 |
tcatttaggcgaaaga-tatagttaaagaaacataatttgggaacaatgtttgaaattgtaaaactaattaaaaaatgtaacatattcagaatctataaa |
13021903 |
T |
|
| Q |
601 |
ttatttctgtagtaaaatatgtttctaaaattctaaatacataaatta-tattttacaaaagtgccccgtcaaataatgaatatgacaacatgcatgtta |
699 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13021902 |
ttatttctgtggtaaaatatgtttctaaaattctaaatacatgaattatttttttacaaaagtgccccgtcaaataatgaatatgacaacatgcatgtta |
13021803 |
T |
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| Q |
700 |
tcgaacacaataaattctgtgacaacacgtcattgaa--atagtgtttttaagtatgtctttggttgca |
766 |
Q |
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| T |
13021802 |
tcggacacattaaattatgtgacaacatgtcattgaaatatagtgtttttaagtatgtctttggttgca |
13021734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 87 - 327
Target Start/End: Complemental strand, 12833030 - 12832790
Alignment:
| Q |
87 |
catacctcctaaattcttcacttttgctgatggccacataatcaacatgtctcctatcttcagaagcataagactcaagaatggcatacataatcttggt |
186 |
Q |
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| T |
12833030 |
catacctacgaaattcttcgcttcggctaatggcagcataatcaacatgttttctatcatcagaagcataagactcaagaatggcagacataatcttagt |
12832931 |
T |
|
| Q |
187 |
aagtctatcacaaactgcagctgcacttttcggttcactatcatctgtagcaccacggaaattgaaacattttgagataaacggttcatgttcaaggaat |
286 |
Q |
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| T |
12832930 |
tagcctgtcacaaattaaagctgctgtctttggttcattgtcatttacggcaccgcgaaaattaaagcatttgtggataaagggttcatgctcaacgaaa |
12832831 |
T |
|
| Q |
287 |
cgatagaagtgatttccctcctcaaaaccattttccctaca |
327 |
Q |
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| T |
12832830 |
cgatacaaatgatttccatcttcaaaatcattttccctaca |
12832790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 12832723 - 12832655
Alignment:
| Q |
412 |
tttcttacccgaaaacaggatggatgaagtgcttcttgcataactgttttccaacctcaacagcctaag |
480 |
Q |
| |
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|||||||||| |||||| |||||||||||||||| || |||||| |||||| | ||||||||||||| |
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| T |
12832723 |
tttcttacccaaaaacattatggatgaagtgcttcctggataactcttttccgatttcaacagcctaag |
12832655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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