View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17821_high_12 (Length: 348)

Name: NF17821_high_12
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17821_high_12
NF17821_high_12
[»] chr5 (5 HSPs)
chr5 (52-339)||(10502234-10502521)
chr5 (7-50)||(10502586-10502629)
chr5 (136-180)||(16937803-16937847)
chr5 (143-179)||(11615575-11615611)
chr5 (136-180)||(34736447-34736491)
[»] chr8 (5 HSPs)
chr8 (136-180)||(40859703-40859747)
chr8 (136-180)||(10758177-10758221)
chr8 (139-180)||(30251374-30251415)
chr8 (136-180)||(29818864-29818908)
chr8 (136-180)||(38602433-38602477)
[»] chr1 (2 HSPs)
chr1 (110-180)||(15477632-15477703)
chr1 (110-180)||(41505751-41505824)
[»] chr4 (8 HSPs)
chr4 (135-180)||(29388719-29388764)
chr4 (136-184)||(15173219-15173267)
chr4 (136-180)||(35571551-35571595)
chr4 (136-180)||(49940087-49940131)
chr4 (136-180)||(13126496-13126540)
chr4 (136-180)||(18815129-18815173)
chr4 (136-180)||(27043750-27043794)
chr4 (136-180)||(54426149-54426193)
[»] chr7 (5 HSPs)
chr7 (116-180)||(34083528-34083592)
chr7 (142-180)||(29363620-29363658)
chr7 (135-180)||(33128856-33128901)
chr7 (143-180)||(46281062-46281099)
chr7 (136-180)||(44822064-44822108)
[»] chr2 (8 HSPs)
chr2 (136-180)||(18179055-18179099)
chr2 (142-180)||(30990359-30990397)
chr2 (136-180)||(3312183-3312227)
chr2 (136-180)||(4607031-4607075)
chr2 (136-180)||(15305780-15305824)
chr2 (136-180)||(26202134-26202178)
chr2 (130-178)||(31561664-31561712)
chr2 (136-180)||(44119888-44119932)
[»] chr6 (2 HSPs)
chr6 (135-180)||(35069532-35069577)
chr6 (136-180)||(835181-835225)
[»] chr3 (1 HSPs)
chr3 (136-180)||(39980835-39980879)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 52 - 339
Target Start/End: Complemental strand, 10502521 - 10502234
Alignment:
Q  52 tatagcaagttaaattttaagctgttttaaatagttaattagaacagcctatgtaaaatgtcaaaagctgttttgataagttctacaaaacttatgttag 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10502521 tatagcaagttaaattttaagctgttttaaatagttaattagaacagcctatgtaaaatgtcaaaagctgttttcataagttctacaaaacttatgttag 10502422  T
Q  152 cagataaggtcaaataagccaatccaaactggttgtacgacttgtgttgagagtttgtggtttcttcttcgttgtaatcatcggtttgatttggttattc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10502421 cagataaggtcaaataagccaatccaaactggttgtacgacttgtgttgagagtttgtggtttcttcttcgttgtaatcattggtttgatttggttattc 10502322  T
Q  252 aactattcaaaattatgcatgattaatgaatacaattaagcctttaattgtttgttattatctttgaatttggatatttagctgttga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10502321 aactattcaaaattatgcatgattaatgaatacaattaagcctttaattgtttgttattatctttgaatttggatatttagctgttga 10502234  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 10502629 - 10502586
Alignment:
Q  7 attgagaaggtaagactagccttgtgtcgataaataacttattt 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10502629 attgagaaggtaagactagccttgtgtcgataaataacttattt 10502586  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 16937847 - 16937803
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  16937847 acaaaacttatgctagtagataagctcaaataagccaatccaaac 16937803  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 11615611 - 11615575
Alignment:
Q  143 ttatgttagcagataaggtcaaataagccaatccaaa 179  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  11615611 ttatgttagtagataagctcaaataagccaatccaaa 11615575  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 34736491 - 34736447
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||||| | |||||||| ||||||||| ||||||||||    
T  34736491 acaaaacttatgtcaccagataagctcaaataagtcaatccaaac 34736447  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 40859747 - 40859703
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  40859747 acaaaacttatgttagcagataagctcaaataagccaatccaaac 40859703  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 10758221 - 10758177
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||    
T  10758221 acaaaacttatgttagcagataagttcaaataagtcaattcaaac 10758177  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 30251415 - 30251374
Alignment:
Q  139 aaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||| || ||||||| ||||||||||||||||||||    
T  30251415 aaacttatgtcagtagataagctcaaataagccaatccaaac 30251374  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 29818908 - 29818864
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||||||    
T  29818908 acaaaacttatgatagtagataagctcaaatatgccaatccaaac 29818864  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 38602433 - 38602477
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||||| || ||||||| ||||||||| ||||||||||    
T  38602433 acaaaacttatgtcagtagataagctcaaataagtcaatccaaac 38602477  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 15477632 - 15477703
Alignment:
Q  110 tgtcaaaagctgttttgataagttct-acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||| |||||||||| ||||||||| ||||||||||||  || ||||||| || |||||||||||||||||    
T  15477632 tgtcataagctgttttcataagttctcacaaaacttatgcaagtagataagctctaataagccaatccaaac 15477703  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 41505751 - 41505824
Alignment:
Q  110 tgtcaaaagctgttttgataagttctacaaaac---ttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||| |||||||||| ||||||||| | ||||   |||||| || ||||||| ||||||||||||||||||||    
T  41505751 tgtcataagctgttttcataagttctcccaaacaacttatgtcagtagataagctcaaataagccaatccaaac 41505824  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 29388719 - 29388764
Alignment:
Q  135 tacaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  29388719 tacaaaacttatgttagtagataaggtcaaataagtcaacccaaac 29388764  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 15173267 - 15173219
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaactggt 184  Q
    ||||||||||||| || ||||||| ||||||||| ||||||||||||||    
T  15173267 acaaaacttatgtcagtagataagttcaaataagtcaatccaaactggt 15173219  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 35571595 - 35571551
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  35571595 acaaaacttatgctagtagataagctcaaataagccaatccaaac 35571551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 49940131 - 49940087
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||||    
T  49940131 acaaaacttatgttagcaggtaagctcaaataagtcaatccaaac 49940087  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 13126540 - 13126496
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||||||||| || |||| | ||||||||||||||||||    
T  13126540 acaaaacttatgttagtaggtaagctaaaataagccaatccaaac 13126496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 18815129 - 18815173
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||||| ||| || |||| ||||||||||||||||||||    
T  18815129 acaaaacttatgctagtaggtaagctcaaataagccaatccaaac 18815173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 27043794 - 27043750
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||||| || ||||||| ||||||||| ||||||||||    
T  27043794 acaaaacttatgtcagtagataagctcaaataagtcaatccaaac 27043750  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 54426149 - 54426193
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||||  || ||||||| ||||||||||||||||||||    
T  54426149 acaaaacttatgccagtagataagctcaaataagccaatccaaac 54426193  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 34083592 - 34083528
Alignment:
Q  116 aagctgttttgataagttctacaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||| ||||||||||| |||||||||  || |||| || ||||||||| ||||||||||    
T  34083592 aagctgttttcataagttctaccaaacttatgcaagtagatgagctcaaataagtcaatccaaac 34083528  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 29363620 - 29363658
Alignment:
Q  142 cttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  29363620 cttatgttagtagataagttcaaataagccaatccaaac 29363658  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 33128856 - 33128901
Alignment:
Q  135 tacaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||| ||||||| ||||| ||||||||| ||||||||||    
T  33128856 tacaaaacttaagttagcatataagctcaaataagtcaatccaaac 33128901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 46281099 - 46281062
Alignment:
Q  143 ttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  46281099 ttatgttagtagataagttcaaataagccaatccaaac 46281062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 44822064 - 44822108
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||||| |||||||||  ||||||||| ||||||||||    
T  44822064 acaaaacttatgtcagcagataaactcaaataagtcaatccaaac 44822108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 18179055 - 18179099
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||||    
T  18179055 acaaaacttatgttagtagataagctcaaataagtcaatccaaac 18179099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 30990397 - 30990359
Alignment:
Q  142 cttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  30990397 cttatgttagtagataagctcaaataagccaatccaaac 30990359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 3312183 - 3312227
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||| || || ||||||| ||||||||||||||||||||    
T  3312183 acaaaacttacgtcagtagataagctcaaataagccaatccaaac 3312227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 4607031 - 4607075
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||| || | ||||||| ||||||||||||||||||||    
T  4607031 acaaaacttatattggtagataagctcaaataagccaatccaaac 4607075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 15305780 - 15305824
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||||| |  ||||||| ||||||||||||||||||||    
T  15305780 acaaaacttatgtcaatagataagctcaaataagccaatccaaac 15305824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 26202134 - 26202178
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||||| |||||||||| |||||||||  |||||||||    
T  26202134 acaaaacttatgtcagcagataagttcaaataagttaatccaaac 26202178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 31561712 - 31561664
Alignment:
Q  130 agttctacaaaacttatgttagcagataaggtcaaataagccaatccaa 178  Q
    |||| ||||||||||||||||| ||||||  ||||||||| ||||||||    
T  31561712 agttttacaaaacttatgttagtagataatctcaaataagtcaatccaa 31561664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 44119888 - 44119932
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    ||||||||||||| ||||  |||| ||||||||||||||||||||    
T  44119888 acaaaacttatgtcagcatgtaagctcaaataagccaatccaaac 44119932  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 35069577 - 35069532
Alignment:
Q  135 tacaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||||||| || ||||||| |||||||||||||| |||||    
T  35069577 tacaaaacttatgtcagtagataagctcaaataagccaatacaaac 35069532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 835225 - 835181
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||||| ||| ||||||| ||||||||| ||||||||||    
T  835225 acaaaacttatgctagtagataagctcaaataaggcaatccaaac 835181  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 39980835 - 39980879
Alignment:
Q  136 acaaaacttatgttagcagataaggtcaaataagccaatccaaac 180  Q
    |||||||||||| ||| ||||||| ||||| ||||||||||||||    
T  39980835 acaaaacttatgctagtagataagctcaaacaagccaatccaaac 39980879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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