View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_high_16 (Length: 335)
Name: NF17821_high_16
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 15 - 328
Target Start/End: Original strand, 1131284 - 1131597
Alignment:
| Q |
15 |
caagcttcaaacagaaacatgtgacactaaaaatgtttgaaaattcatagcaacttagcatggaaggttaaaacaaagcttacacacacagttgaaatcc |
114 |
Q |
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| T |
1131284 |
caagcttcaaacagaaacatgtgacactaaaaatgtttgaaaattcatagcaacttagcatggaaggttaaaacaaagcttacacacacagttgaaatcc |
1131383 |
T |
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| Q |
115 |
aagataacatggatatggatggtgcagagcttctagaacggcgaggctcagagcgattatcatttgcaccaccgttagctccttttcctctagctttctt |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1131384 |
aagacaacatggatatggatggtgcagagcttctagaacggcgaggctcagagcgattatcatttgcaccaccgttagctccttttcctctagctttctt |
1131483 |
T |
|
| Q |
215 |
aattgagtcataagctcgttcaaatttttcctccttgatatatttcttatcttctctgtgcaacttgattccttcttttatgcttccatagtttcctaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1131484 |
aattgagtcataagctcgttcaaatttttcctccttgatatatttcttatcttctctgtgcaacttgattccttcttttatgcttccatagtttcctaca |
1131583 |
T |
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| Q |
315 |
tcttaatagaataa |
328 |
Q |
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|||||||||||||| |
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| T |
1131584 |
tcttaatagaataa |
1131597 |
T |
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