View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_high_18 (Length: 292)
Name: NF17821_high_18
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 43876118 - 43876374
Alignment:
| Q |
17 |
cataggattattcaacgacttaacaccgtcaaaatcaaaaactagaaacagattgtgagaatcaacagtgctgttagcttccaaaggttttgcaatgaca |
116 |
Q |
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| T |
43876118 |
cataggattattcaacgacttaacaccgtcaaaatcaaaaactagaaacagattgtgagaatcaacagtgctgttagcttccaaaggttttgcaatgaca |
43876217 |
T |
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| Q |
117 |
ggaaacctcaaacccagttcctcaattgtgcctaaatcgaatgatttcggttctttcacaacaacttgtttgggaacttcgacaatgaagttttcatttt |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43876218 |
ggaaacctcaaacccagttcctcaattgcgcctaaatcgaatgatttcggttctttcacaacaacttgtttgggaacttcgacaatgaagttttcatttt |
43876317 |
T |
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| Q |
217 |
caatagaaagatgcaaatgggtcacagattcaagcatggtaagacgattatgaagac |
273 |
Q |
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| T |
43876318 |
caatagaaagatgcaaatgggtcacagattcaagcatcgtaagacgattatgaagac |
43876374 |
T |
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