View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17821_high_2 (Length: 629)
Name: NF17821_high_2
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 439
Target Start/End: Original strand, 24744217 - 24744646
Alignment:
| Q |
14 |
attattcttaccgcaaatcttaacatatatagaacgatcccgaattcaactactatcccttaacattctggctcttctaacaaactaactactaacannn |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24744217 |
attattcttaccgcaaatcttaacatatgtagaatgatcccgaattcaactactatcccttaacattctggctcttctaacaaactaactactaacattt |
24744316 |
T |
|
| Q |
114 |
nnnnn--attnnnnnnnnccttaatattaaaaagtttggaattagtgtaaaggatttcaaattcattgaagagaagaaatatgttagaaaagaaggaaat |
211 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24744317 |
ttttataaaaaaaaaaaaccttaatattaaaaagtttggaattagtgtaaaggatttcaaattcattgaagagaagaaatatgttggaaaagaaggaaat |
24744416 |
T |
|
| Q |
212 |
atcaagttaaattcatataaacaaaatatatttaaatatgattttaatgtttttgggttttagttcttgtaggnnnnnnnatttaaattcaatctctgta |
311 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
24744417 |
atcaagttcaattcatataaacaaaatatatttaaatatgattttaatgtttttgggttttagttcttgtaggtttttttatttaaattcagtctctgta |
24744516 |
T |
|
| Q |
312 |
aattt-aaaagctgttgtttttagtctct-atgtcgtacgtgacgaaaatatatcatgtcatgtgacccaataaattgatttagtgactaatatcaacag |
409 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| |||| |||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24744517 |
aatttaaaaagctgttgtttttagtctctgatgttgtacatgacaaaaaaatatcatgtcatgtgacccaataagttgatttagtgactaatatcaacag |
24744616 |
T |
|
| Q |
410 |
tttttaaacgtgtagggactgaattcaaac |
439 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
24744617 |
tttttaaatgtgtagggactgaattcaaac |
24744646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 548 - 611
Target Start/End: Original strand, 24744756 - 24744819
Alignment:
| Q |
548 |
aagaattgacaagctcacagtttttgacaattctttgccaatttccatattgcgtaggcacaac |
611 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24744756 |
aagaattgacaaactcacggttttggacaattctttgccaatttccatattgcgtaggcacaac |
24744819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University