View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_high_22 (Length: 250)
Name: NF17821_high_22
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 13022501 - 13022272
Alignment:
| Q |
1 |
gtagacaccgctaagagtttaagaaaatgaaatcactgaatgaaactacttgtgttgatgtcgtgatagacaataagatttactaccatacctcctaaat |
100 |
Q |
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| T |
13022501 |
gtagacaccgctaagagtttaagaaaatgaaatcactgaatgaaactacttgtgttgatgtcgtgatagacaataagatttactaccatacctcctaaat |
13022402 |
T |
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| Q |
101 |
tcttcacttttgctgatggccacataatcaacatgtctcctatcttcagaagcataagactcaagaatggcatacataatcttggtaagtctatcacaaa |
200 |
Q |
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| T |
13022401 |
tcttcacttttgctgatggccacataatcaacatgtctcctatcttcagaagcataagactcaagaatggcatacataatcttggtaagtctatcacaaa |
13022302 |
T |
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| Q |
201 |
ctgcagctgcacttttcggttcactatcat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
13022301 |
ctgcagctgcacttttcggttcactatcat |
13022272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 12833030 - 12832917
Alignment:
| Q |
87 |
catacctcctaaattcttcacttttgctgatggccacataatcaacatgtctcctatcttcagaagcataagactcaagaatggcatacataatcttggt |
186 |
Q |
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| T |
12833030 |
catacctacgaaattcttcgcttcggctaatggcagcataatcaacatgttttctatcatcagaagcataagactcaagaatggcagacataatcttagt |
12832931 |
T |
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| Q |
187 |
aagtctatcacaaa |
200 |
Q |
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| T |
12832930 |
tagcctgtcacaaa |
12832917 |
T |
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