View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17821_high_4 (Length: 546)

Name: NF17821_high_4
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17821_high_4
NF17821_high_4
[»] chr7 (12 HSPs)
chr7 (12-529)||(42848491-42849007)
chr7 (363-529)||(42855036-42855201)
chr7 (14-187)||(42855475-42855648)
chr7 (235-511)||(42853163-42853435)
chr7 (396-529)||(42860751-42860884)
chr7 (91-171)||(42857084-42857164)
chr7 (396-529)||(42856674-42856807)
chr7 (363-419)||(42855191-42855247)
chr7 (11-54)||(42857184-42857227)
chr7 (246-323)||(42856910-42856986)
chr7 (246-323)||(42860987-42861063)
chr7 (21-65)||(42861513-42861557)
[»] chr4 (1 HSPs)
chr4 (451-529)||(27272-27350)


Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 12 - 529
Target Start/End: Complemental strand, 42849007 - 42848491
Alignment:
Q  12 agagacacgcaatgaattgacaattcctagtaaagaagggaaagaattataagcctaatcaagttatatccatagagaatgcaagaatagaggtttcaca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42849007 agagacacgcaatgaattgacaattcctagtaaagaagggaaagaattataagcctaat-aagttatatccatagagaatgcaagaatagaggtttcaca 42848909  T
Q  112 acagcaatggcctgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaatagagtaaatgcgttacagtggtgcttgcatctttgtgagct 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42848908 acagcaatggcctgaaactcaccaaataggaaagtcaaaaatatgcagaaacagaaaatagagtaaatgtgttacagtggtgcttgcatctttgtgagct 42848809  T
Q  212 tcagaacggccaagcatagctactagttaaatgactctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaata 311  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42848808 tcagaacggccaagcatagctactagttaaatgactccggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcatcaaacagaata 42848709  T
Q  312 atagtctttgaaatttacttctagtatcataaatcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaa 411  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42848708 atagtctttgaaatttacttctattatcataaatcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaa 42848609  T
Q  412 atgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttca 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42848608 atgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatgccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttca 42848509  T
Q  512 ttagttggctgttgatgc 529  Q
    ||||||||||||||||||    
T  42848508 ttagttggctgttgatgc 42848491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 363 - 529
Target Start/End: Complemental strand, 42855201 - 42855036
Alignment:
Q  363 aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatacc 462  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  42855201 aaaattaaaattaaagaagacttaaatccctcccaatagtgaaaa-aaaatgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgcc 42855103  T
Q  463 ctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgc 529  Q
    |||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||||| ||||||    
T  42855102 ctcctccaagtgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgc 42855036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 42855648 - 42855475
Alignment:
Q  14 agacacgcaatgaattgacaattcctagtaaagaagggaaagaattataagcctaatcaagttatatccatagagaatgcaagaatagaggtttcacaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||||||||||||||||||||||    
T  42855648 agacacgcaatgaattgacaattcctagtaaagaagggaaagagttataagcctaatcaagttatatctttggggaatgcaagaatagaggtttcacaac 42855549  T
Q  114 agcaatggcctgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaat-agagtaaatgcgttaca 187  Q
    ||||||||||||||| ||||| ||| ||| ||| ||||||||||||||||||||||| ||||| |||||||||||    
T  42855548 agcaatggcctgaaattcacctaatgggagagtgaaaaatatgcagaaacagaaaataagagt-aatgcgttaca 42855475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 235 - 511
Target Start/End: Complemental strand, 42853435 - 42853163
Alignment:
Q  235 tagttaaatgactctg--gtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaa------acagaataatagtctttgaaatt 326  Q
    |||||||| |||||||  |||||||||| |||||||||||||||||||| | ||||| |||| || |||||      |||||||| ||||||||||||||    
T  42853435 tagttaaacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacactcaacagaata-tagtctttgaaatt 42853337  T
Q  327 tacttctagtatcataaatcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatca 426  Q
    ||||||||| |||||| |||||||||| ||||||           ||||||||||| || ||| ||||||||||||||||||||||| || ||| ||||     
T  42853336 tacttctagaatcatacatcttgagtatttaaaa-----------attaaggaagatttaaatccctcccaatagtgaaaagaaaattaacatgggatcc 42853248  T
Q  427 agaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttca 511  Q
    |||||||||| ||| ||||||| |||||||||  |||||||||| || ||||||||||||||| ||||||||| |||||||||||    
T  42853247 agaaaaaaccttagagagagaatcttttaacaggccctcctccaggcattttgaaagatccttgatcctccttttctgcatttca 42853163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 396 - 529
Target Start/End: Complemental strand, 42860884 - 42860751
Alignment:
Q  396 caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct 495  Q
    ||||||||||||||||||  |||||||||| |||||||||| | ||||||| |||||| ||||  ||||| |||| |||||||||||||||  |||||||    
T  42860884 caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcgtccaggcgttttgaaagatctgtaatcct 42860785  T
Q  496 ccttctctgcatttcattagttggctgttgatgc 529  Q
    || | ||||||||||| || ||||||||||||||    
T  42860784 ccctttctgcatttcagtaattggctgttgatgc 42860751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 42857164 - 42857084
Alignment:
Q  91 tgcaagaatagaggtttcacaacagcaatggcctgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaata 171  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||    
T  42857164 tgcaagaatagaggtttcacaacagcaatggcctgaaattcaccaaatgggagagtgaaaaatatgcagaaacagaaaata 42857084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 396 - 529
Target Start/End: Complemental strand, 42856807 - 42856674
Alignment:
Q  396 caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct 495  Q
    ||||||||||||||||||  |||||||||| |||||||||| | ||||||| |||||| ||||  ||||| |||| |||||||||||||||  ||||| |    
T  42856807 caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcatccaggcgttttgaaagatctgtaatctt 42856708  T
Q  496 ccttctctgcatttcattagttggctgttgatgc 529  Q
    || | ||||||||||| || ||||||||||||||    
T  42856707 ccctttctgcatttcagtaattggctgttgatgc 42856674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 42855247 - 42855191
Alignment:
Q  363 aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaat 419  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||    
T  42855247 aaaatttaaattaaggaagacttaaatccctcccaatagtgaaaagaaaattaaaat 42855191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 42857227 - 42857184
Alignment:
Q  11 cagagacacgcaatgaattgacaattcctagtaaagaagggaaa 54  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  42857227 cagagactcgcaatgaattgacaattcctagtaaagaagggaaa 42857184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 42856986 - 42856910
Alignment:
Q  246 ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa 323  Q
    |||| |||||||||| ||||||||||| |||||||| |  ||||||||| || ||| |||| ||||| ||||||||||    
T  42856986 ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa 42856910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 42861063 - 42860987
Alignment:
Q  246 ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa 323  Q
    |||| |||||||||| ||||||||||| |||||||| |  ||||||||| || ||| |||| ||||| ||||||||||    
T  42861063 ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa 42860987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 42861557 - 42861513
Alignment:
Q  21 caatgaattgacaattcctagtaaagaagggaaagaattataagc 65  Q
    |||||||||| || |||||||||||||||||||| | ||||||||    
T  42861557 caatgaattgtcagttcctagtaaagaagggaaatagttataagc 42861513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 529
Target Start/End: Complemental strand, 27350 - 27272
Alignment:
Q  451 ttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgc 529  Q
    ||||||||| |||||||||| |||||||| ||||||||||||||||||| | || |||||| || ||||||| ||||||    
T  27350 ttttaacatgccctcctccaggcgttttgcaagatccttaatcctccttttttgaatttcactaattggctgctgatgc 27272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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