View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_high_6 (Length: 533)
Name: NF17821_high_6
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 51734100 - 51734358
Alignment:
| Q |
19 |
ggttaggtgcaaagcagaatcatttaaagaagtatgcagaatggtatacttcaaaaggatttcatgtcattacatttacgtttccaatggcggatgtgtt |
118 |
Q |
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| T |
51734100 |
ggttaggtgcaaagcagaatcatttaaagaagtatgcagaatggtatacttcaaaaggatttcatgtcattacatttacgtttccaatggcggatgtgtt |
51734199 |
T |
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| Q |
119 |
gagttatcagcctggaggaaaagccgaacaaaatgttcacatgcttgtggaccacttgggggattggttagaagaggagaatgnnnnnnntcttgtcttt |
218 |
Q |
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| T |
51734200 |
gagttatcagcctggaggaaaagccgaacaaaatgttcacatgcttgtggaccacttgggggattggttagaagaggagaatgaaaaaaatcttgtcttt |
51734299 |
T |
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| Q |
219 |
catactttcagcaacactggatggttaacgtaagtgtaatttgttatgcaaaataatga |
277 |
Q |
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| T |
51734300 |
catactttcagcaacactggatggttaacgtaagtgtaatttgttatgcaaaataatga |
51734358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 341 - 525
Target Start/End: Original strand, 51734422 - 51734611
Alignment:
| Q |
341 |
agattgcatgtttcaggtatggtgttatgttggagcattttcaaaggcaagacccgtctttgatggaaaagattaggggctgcattgtagattctgcacc |
440 |
Q |
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| T |
51734422 |
agattgcatgtttcaggtatggtgttatgttggagcattttcaaaggcaagacccgtctttgatggaaaagattaggggctgcattgtagattctgcacc |
51734521 |
T |
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| Q |
441 |
tgttgcaaaccctgacccacaggtaaaggctttagcaattttaagacttggt-----cagccatttgtttttcatgttttgtcctatgct |
525 |
Q |
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| T |
51734522 |
tgttgcaaaccctgacccacaggtaaaggctttagcaattttaagacttggtgaacacagccatttgtttttcatattttgtcctatgct |
51734611 |
T |
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