View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17821_low_10 (Length: 408)
Name: NF17821_low_10
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_low_10 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 51271535 - 51271137
Alignment:
| Q |
1 |
attgctgaatacaagttttgttgttgttgctgtaatactgctgaatacaagttctgctgcttattgaacttttgaaattgtgtaattgctagttctgttg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51271535 |
attgttgaatacaagttttgttgttgttgctgtaatactgctgaatacaagttctgctgcttattgaacttttgaaattgtgtaattgctagttctgttg |
51271436 |
T |
|
| Q |
101 |
tgtaattgctgaatacttttgaaagatattgaagnnnnnnnctatggatgagatcagtagtttcattacaaccacgtataaaagaatgttatactaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51271435 |
tgtaattgctgaatacttttgaaagatattgaagaaaaaaactatggatgagatcagtagtttcattacaaccacgtataaaagaatgttatactaaatc |
51271336 |
T |
|
| Q |
201 |
atgctatagtttcatatttggcacaaagagatagtttcgtacttgttgaaatgagttatcatgcatgtacttgtcaaccatttttactc--nnnnnnnnn |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
51271335 |
atgctatagtttcatatttggcacaaagagatagtttcatacttgttgaaatgagttatcatgcatgta-ttgtcaaccatttttactcaaaaaaaaata |
51271237 |
T |
|
| Q |
299 |
ggacatttcttcatggaatgaagttgttaacttggggtaaatcattcttacttcctacaattgtatgtacatgactttgttatctctttctttccctttg |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
51271236 |
ggacatttcttcatggaatgaagttgttaacttggggtaaatcattcttacttcctacaattgtatgtacatgactttgttatctctttctttccttttg |
51271137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 10797574 - 10797527
Alignment:
| Q |
9 |
atacaagttttgttgttgttgctgtaatactgctgaatacaagttctg |
56 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
10797574 |
atacacgttctgttgttgttgctgtaatactgctgagtacaagttctg |
10797527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 24553655 - 24553689
Alignment:
| Q |
239 |
gtacttgttgaaatgagttatcatgcatgtacttg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
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| T |
24553655 |
gtacttgttgaaatgagttatcatgcatgcacttg |
24553689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 22775033 - 22774633
Alignment:
| Q |
1 |
attgctgaatacaagttttgttgttgttgc---tgtaatactgctgaatacaagttctgctgcttattgaacttttgaaattgtgtaattgctagttctg |
97 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22775033 |
attgctgaatacaagttctgttgttgttgcagctgtaatactgctgaatacaagttctgctgcttattgaacttttgaaattgtgtaattgctagttctg |
22774934 |
T |
|
| Q |
98 |
ttgtgtaattgctgaatacttttgaaagatattgaagnnnnnnnctatggatgagatcagtagtttcattacaaccacgtataaaagaatgttatactaa |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
22774933 |
ttgtgtaattactgaatacttttgaaagatattgaagaaaaaaactatggatgagatcagtagtttcattacaaccacttataaaagaatgttatactaa |
22774834 |
T |
|
| Q |
198 |
atcatgctatagtttcatatttggcacaaagagatagtttcgtacttgttgaaatgagttatcatgcatgtacttgtcaaccatttttactcnnnnnnnn |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22774833 |
atcatgctatagtttcatatttggcacaaagagatagttttatacttgttgaaatgagttatcatgcatgtacttgtcaaccatttttactcaaaaaaat |
22774734 |
T |
|
| Q |
298 |
nggacatttcttcatggaatgaagttgttaacttggggtaaatcattcttacttcctacaattgtatgtacatgactttgttatctctttctttcccttt |
397 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22774733 |
aggacatttcttcatggaatgaatttgttaacttggggtaaatcattcttacttcctacaattgtatgtacatgactttgttatctctttctttcctttt |
22774634 |
T |
|
| Q |
398 |
g |
398 |
Q |
| |
|
| |
|
|
| T |
22774633 |
g |
22774633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 24253428 - 24253353
Alignment:
| Q |
299 |
ggacatttcttcatggaatgaagttgttaacttggggtaaatcattcttacttcctacaattgtatgtacatgact |
374 |
Q |
| |
|
||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
24253428 |
ggacatttcatcatggaataatgttgtcaacttacattaaatcattcttacttcctagaattgtatgtacatgact |
24253353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 48900743 - 48900775
Alignment:
| Q |
166 |
ttacaaccacgtataaaagaatgttatactaaa |
198 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
48900743 |
ttacaaccatgtataaaagaatgttatactaaa |
48900775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 35631 - 36029
Alignment:
| Q |
1 |
attgctgaatacaagttttgttgttgttgctgtaatactgctgaatacaagttctgctgcttattgaacttttgaaattgtgtaattgctagttctgttg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35631 |
attgatgaatacaagttttgttgttgttgctgtaatactgatgaatacaagttctgctgcttattgaacttttgaaattgtgtaattgctagttctgttg |
35730 |
T |
|
| Q |
101 |
tgtaattgctgaatacttttgaaagatattgaagnnnnnnnctatggatgagatcagtagtttcattacaaccacgtataaaagaatgttatactaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35731 |
tgtaattgctgaatacttttgaaagatattgaagaaaaaaactatggatgagatcagtagtttcattacaaccacgtataaaagaatgttatactaaatc |
35830 |
T |
|
| Q |
201 |
atgctatagtttcatatttggcacaaagagatagtttcgtacttgttgaaatgagttatcatgcatgtacttgtcaaccatttt-tactcnnnnnnnnng |
299 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||| | | |
|
|
| T |
35831 |
atgctatagtttcatatttggaacaaagagatagtttcatacttgttgaaatgagttatcatgcatgtaataaaaaacaattttaaaaaaaaaaaaatag |
35930 |
T |
|
| Q |
300 |
gacatttcttcatggaatgaagttgttaacttggggtaaatcattcttacttcctacaattgtatgtacatgactttgttatctctttctttccctttg |
398 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35931 |
gacatttcttcatggaatgaaattgttaacttggggtaaatcattcttacttcctacaattgtatgtacatgactttgttatctctttctttccttttg |
36029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 299 - 393
Target Start/End: Original strand, 14604404 - 14604504
Alignment:
| Q |
299 |
ggacatttcttcatggaatgaagttgttaacttggggtaaatcattcttacttcctac------aattgtatgtacatgactttgttatctctttctttc |
392 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14604404 |
ggacatttcatcatggaatgatgttgttaacttacggtaaatgattcttacttcctacaattgtaattgtatgtacatgactttattatctctttctttc |
14604503 |
T |
|
| Q |
393 |
c |
393 |
Q |
| |
|
| |
|
|
| T |
14604504 |
c |
14604504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 393
Target Start/End: Complemental strand, 32618516 - 32618418
Alignment:
| Q |
301 |
acatttcttcatggaatgaagttgttaacttggggtaaatcattcttacttcctacaat------tgtatgtacatgactttgttatctctttctttcc |
393 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
32618516 |
acatttcatcatggaatgatgttgttgacttacggtaaatcattcttactttctacaattgtaattgtatgtacatgactttattatctctttctttcc |
32618418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 25897447 - 25897488
Alignment:
| Q |
335 |
gtaaatcattcttacttcctacaattgtatgtacatgacttt |
376 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25897447 |
gtaaatcattcgtacttcctacaattgtatgtacatgacttt |
25897488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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