View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_low_12 (Length: 399)
Name: NF17821_low_12
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 36475952 - 36476338
Alignment:
| Q |
8 |
atattattctctaatttgttctattttacaggttcagtttctagttcttgtgcaaaatttggttcattgttgttagcacttgcagccacacgttcacata |
107 |
Q |
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| T |
36475952 |
atattattttctaatttgttctattttacaggttcagtttctagttcttgtgcaaaatttggttcattgttgttagcacttgcagccacacgttcacata |
36476051 |
T |
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| Q |
108 |
caaatcattattaacgacacttgaggaacaacactctgcaccaaatcagctgctctcctcaagactg-------------atcctcattctcccaaattt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
36476052 |
caaatcattattaacgacacttgaggaacaacactctgcaccaaatcagctgctctcctcaaaactgcagtggaatttcgatcctcattctcccaaattt |
36476151 |
T |
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| Q |
195 |
ttcagtttattttccaccaaattccccacatggttgctgcaaattaattcgtcttctgactaggaagattttccagcacgagaaataccaaatctgcaat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36476152 |
ttcagtttattttccaccaaattccccacatggttgctgcaaatcaattcgtcttctgactaggaagattttccagcacgagaaataccaaatctgcaat |
36476251 |
T |
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| Q |
295 |
atctgatgcatttccggcaatattctgccgctgattccagcatccagcttctgtccagacctgcgatgtattggacattgaatccct |
381 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36476252 |
atctgatgcatttccggcaatattctgcagctgattccagcatccagcttctgtccagacctgcgatgtattggacattgaatccct |
36476338 |
T |
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