View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_low_13 (Length: 394)
Name: NF17821_low_13
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 42848857 - 42848491
Alignment:
| Q |
11 |
cagagaatagagtaaatgcgttacagtggtgcttgcatctttgtgagcttcagaacggccaagcatagctactagttaaatgactctggtgtatccaaat |
110 |
Q |
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| T |
42848857 |
cagaaaatagagtaaatgtgttacagtggtgcttgcatctttgtgagcttcagaacggccaagcatagctactagttaaatgactccggtgtatccaaat |
42848758 |
T |
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| Q |
111 |
tcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaaatttacttctagtatcataaatcttgagtagttaaaatt |
210 |
Q |
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| T |
42848757 |
tcatgtagtcctcctaaaatatgagtcgaaaaaatcatcaaacagaataatagtctttgaaatttacttctattatcataaatcttgagtagttaaaatt |
42848658 |
T |
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| Q |
211 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatacc |
310 |
Q |
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| T |
42848657 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatgcc |
42848558 |
T |
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| Q |
311 |
ctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgc |
377 |
Q |
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| T |
42848557 |
ctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgc |
42848491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 211 - 377
Target Start/End: Complemental strand, 42855201 - 42855036
Alignment:
| Q |
211 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatacc |
310 |
Q |
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| T |
42855201 |
aaaattaaaattaaagaagacttaaatccctcccaatagtgaaaa-aaaatgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgcc |
42855103 |
T |
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| Q |
311 |
ctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgc |
377 |
Q |
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| T |
42855102 |
ctcctccaagtgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgc |
42855036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 83 - 359
Target Start/End: Complemental strand, 42853435 - 42853163
Alignment:
| Q |
83 |
tagttaaatgactctg--gtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaa------acagaataatagtctttgaaatt |
174 |
Q |
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| T |
42853435 |
tagttaaacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacactcaacagaata-tagtctttgaaatt |
42853337 |
T |
|
| Q |
175 |
tacttctagtatcataaatcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatca |
274 |
Q |
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| T |
42853336 |
tacttctagaatcatacatcttgagtatttaaaa-----------attaaggaagatttaaatccctcccaatagtgaaaagaaaattaacatgggatcc |
42853248 |
T |
|
| Q |
275 |
agaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttca |
359 |
Q |
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| T |
42853247 |
agaaaaaaccttagagagagaatcttttaacaggccctcctccaggcattttgaaagatccttgatcctccttttctgcatttca |
42853163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 244 - 377
Target Start/End: Complemental strand, 42860884 - 42860751
Alignment:
| Q |
244 |
caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct |
343 |
Q |
| |
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|||||||||||||||||| |||||||||| |||||||||| | ||||||| |||||| |||| ||||| |||| ||||||||||||||| ||||||| |
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| T |
42860884 |
caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcgtccaggcgttttgaaagatctgtaatcct |
42860785 |
T |
|
| Q |
344 |
ccttctctgcatttcattagttggctgttgatgc |
377 |
Q |
| |
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|| | ||||||||||| || |||||||||||||| |
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| T |
42860784 |
ccctttctgcatttcagtaattggctgttgatgc |
42860751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 377
Target Start/End: Complemental strand, 42856807 - 42856674
Alignment:
| Q |
244 |
caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct |
343 |
Q |
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|||||||||||||||||| |||||||||| |||||||||| | ||||||| |||||| |||| ||||| |||| ||||||||||||||| ||||| | |
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| T |
42856807 |
caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcatccaggcgttttgaaagatctgtaatctt |
42856708 |
T |
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| Q |
344 |
ccttctctgcatttcattagttggctgttgatgc |
377 |
Q |
| |
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|| | ||||||||||| || |||||||||||||| |
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| T |
42856707 |
ccctttctgcatttcagtaattggctgttgatgc |
42856674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 42855247 - 42855191
Alignment:
| Q |
211 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaat |
267 |
Q |
| |
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|||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||| |
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| T |
42855247 |
aaaatttaaattaaggaagacttaaatccctcccaatagtgaaaagaaaattaaaat |
42855191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 42856986 - 42856910
Alignment:
| Q |
94 |
ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa |
171 |
Q |
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| T |
42856986 |
ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa |
42856910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 42861063 - 42860987
Alignment:
| Q |
94 |
ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa |
171 |
Q |
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| T |
42861063 |
ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa |
42860987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 27350 - 27272
Alignment:
| Q |
299 |
ttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgc |
377 |
Q |
| |
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||||||||| |||||||||| |||||||| ||||||||||||||||||| | || |||||| || ||||||| |||||| |
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| T |
27350 |
ttttaacatgccctcctccaggcgttttgcaagatccttaatcctccttttttgaatttcactaattggctgctgatgc |
27272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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