View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_low_15 (Length: 347)
Name: NF17821_low_15
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 27444405 - 27444090
Alignment:
| Q |
11 |
cacagaaaaaggacaagattaaatgctgatgacgacataaggagcataacctatataatacacccatcaagacaataaattatnnnnnnnttactgcaat |
110 |
Q |
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| T |
27444405 |
cacagaaaaaggacaagattaaatgctgatgacgacataaggagcataacctatataataaacccatcaagacaataaattataaaaaaattactgcaat |
27444306 |
T |
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| Q |
111 |
aataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatatgtttcatttgtatacatgcacttannnnnnnnnnnngacaaaaattaa |
210 |
Q |
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| T |
27444305 |
aataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatacg-ttcatttgtatacatgcactta--ttttatttttgacaaaaattaa |
27444209 |
T |
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| Q |
211 |
caaaaattaattaagacggcatattttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtg |
310 |
Q |
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|||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27444208 |
caaaaattaattaagacggcatattttgtttggtcatggagttcaagctgatggacagaaggtgatggcatagtcgggtcttgcaaagcaagtgaaagtg |
27444109 |
T |
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| Q |
311 |
ctgctcttatcgtcgtaag |
329 |
Q |
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| T |
27444108 |
ctgctcttatcgtcgtaag |
27444090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 101 - 329
Target Start/End: Original strand, 27432298 - 27432520
Alignment:
| Q |
101 |
ttactgcaataataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatatgtttcatttgtatacatgcacttannnnnnnnnnnnga |
200 |
Q |
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| T |
27432298 |
ttactgcaataataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatacgtttcatttgtatacatgcactta--ttttatttttga |
27432395 |
T |
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| Q |
201 |
caaaaattaacaaaaattaattaagacggcatattttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagca |
300 |
Q |
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| T |
27432396 |
caaa----gacataaattaattaagacggcatattttgtttgatcgtgaagtttaatttgatgggcagaaggtgatggcgtaatcgggtcttgcaaagca |
27432491 |
T |
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| Q |
301 |
agtgaaagtgctgctcttatcgtcgtaag |
329 |
Q |
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| T |
27432492 |
agtgaaagtgctgctcttatcgtcgtaag |
27432520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 27220679 - 27220773
Alignment:
| Q |
235 |
tttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaag |
329 |
Q |
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| T |
27220679 |
tttgtttggtcatggagttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaag |
27220773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 27214717 - 27214811
Alignment:
| Q |
235 |
tttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaag |
329 |
Q |
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| T |
27214717 |
tttgtttggtcatggagttcaagctgatggacagaaggtgatggcatagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaag |
27214811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 27207362 - 27207440
Alignment:
| Q |
251 |
gttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaag |
329 |
Q |
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| T |
27207362 |
gttcaagctgatgggcagaaggtgattgcatagtcgggtcttgcaaagcaagtgaaaatgctgctcttatcgtcgtaag |
27207440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 27388702 - 27388734
Alignment:
| Q |
297 |
agcaagtgaaagtgctgctcttatcgtcgtaag |
329 |
Q |
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| T |
27388702 |
agcaagtgaaagtgctgctcttatcatcgtaag |
27388734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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