View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_low_16 (Length: 340)
Name: NF17821_low_16
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 31538183 - 31538451
Alignment:
| Q |
20 |
catattcatgattattccttcattaatctcatgtcgccaaaaaatcaaataattctgaataaccaaattgatcaaatgcaagctaaccaaatagagtaga |
119 |
Q |
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| T |
31538183 |
catattcatgattattccttcattaatctcatgtcgccaaaaaatcaaataattctgaataaccaaattgatcaaatgcaagctaagcaaatagagtaga |
31538282 |
T |
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| Q |
120 |
tacaccaatgatc--tgtctaccacttcatacgtacgaaattcataaattgcttagcatgtaccaaactattaattgataaaacactaccaaaataccca |
217 |
Q |
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||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31538283 |
tacaccaatgatctgtgtctaccaattca----tacgaaattcataaattgcttagcatgtaccaaactattaattgataaaacactgccaaaataccca |
31538378 |
T |
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| Q |
218 |
acaatccagggatgacaatatggcccaaattcgatgggt-tccgcaataaatacatataataggtagggtaaa |
289 |
Q |
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|| ||||||||||| ||||||| |||||| ||||||||| ||| |||||||||||||||||||||||| |||| |
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| T |
31538379 |
accatccagggatggcaatatgacccaaactcgatgggtatccacaataaatacatataataggtaggataaa |
31538451 |
T |
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