View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_low_17 (Length: 337)
Name: NF17821_low_17
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 165 - 329
Target Start/End: Original strand, 45364498 - 45364662
Alignment:
| Q |
165 |
taccttttcaattatcagtcctttactggaagaagaccttccaaacttcgaaggtgaaggttcagagtatcgctccaccgttttcctttccctagttggc |
264 |
Q |
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| T |
45364498 |
taccttttcaattatcagtcctttactggaagaagaccttccaaacttcgaaggtgaaggttcagagtaccgctccaccgttttcctttccctagttggc |
45364597 |
T |
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| Q |
265 |
ctatcactcgtcggagtaaccggactcttcttctccgacgactctttcttcacacccttcatctc |
329 |
Q |
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| T |
45364598 |
ctatcactcgtcggagtaaccggactcttcttctccgacgactctttcttcacacccttcttctc |
45364662 |
T |
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Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 45364348 - 45364417
Alignment:
| Q |
17 |
tcaaaaggaactatgtaaggcaattagacataccattaggaatatccttaagttgagtaccacgtccctg |
86 |
Q |
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| T |
45364348 |
tcaaaaggaactatgtaaggcaattagacataccattaggaatatccttaagctgagtaccacgtccctg |
45364417 |
T |
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