View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_low_2 (Length: 636)
Name: NF17821_low_2
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Original strand, 13022477 - 13023097
Alignment:
| Q |
1 |
ttcttaaactcttagcggtgtctacttgttagtgtccatctcgtatccaatgtccatatttgtgttggcacttggttctactgagaaatgaggatgaatg |
100 |
Q |
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| T |
13022477 |
ttcttaaactcttagcggtgtctactttttagtgtccatctcgtatccaatgtccatatttgtgttggcacttggttctactgagaaatgaggatgaatg |
13022576 |
T |
|
| Q |
101 |
aaatgaagggagaaaaattaacagaagttagaagtacatccttatacgttagtttaacttggatacaaagactgctatgtatagaacatgtcaaggtgca |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13022577 |
aaatgaagggagaaaaattaacagaa-------gtacatccttatacgttagtttaacttggatacaaagactgctatgtatagaacatgtcaaggtgca |
13022669 |
T |
|
| Q |
201 |
cgatacaaggaaaagaaaggcagagaataacagaattcctaactgtcatagctgctagtgatggtgtggcagccatagctcataggtagcttgcaaaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13022670 |
cgatacaaggaaaagaaaggcagagaataacagaattcctaactgtcatagctgctagtgatggtgtggcagccatagctcataggtagcttgcaaaaca |
13022769 |
T |
|
| Q |
301 |
agtaactctttaagaaccttggaacacaagtcactgtctgatgctgacacggccatgccacatttagcttcattcaattacttctatttcttaaattatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13022770 |
agtaactctttaagaaccttggaacacaagtcactgtctgatgctgacacgaccatgccacatttagcttcattcaattacttctatttcttaaattatt |
13022869 |
T |
|
| Q |
401 |
gcatgtgcttacacgttagtgtcacgtacggtgtctgtgtccgctcttgatagattaattatctccggtttgcaacttatattttttaaaaacaaatgta |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13022870 |
gcatgtgcttacacgttagtgtcacgtacggtgtctgtgtccgttcttgatagattaattatctccggtttgcaacttatattttttaaaaacaaatgta |
13022969 |
T |
|
| Q |
501 |
gtcattgtccaatcttagttttcactagacaactagggaatgaatgtttgattttgatcattttgagaaatatgcttgctcctaaactttctttctcatg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13022970 |
gtcattgtccaatcttagttttcactagacaactagggaatgaatgtttgattttgatcattttgagaaatatgcttgctcctaaactttctttctcatg |
13023069 |
T |
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| Q |
601 |
tcttgaaatcggaacctccacctttggt |
628 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
13023070 |
tcttgaaatcggaacctccacctttggt |
13023097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 400
Target Start/End: Original strand, 42654366 - 42654395
Alignment:
| Q |
371 |
cattcaattacttctatttcttaaattatt |
400 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42654366 |
cattcaattacttctatttcttaaattatt |
42654395 |
T |
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