View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17821_low_23 (Length: 253)

Name: NF17821_low_23
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17821_low_23
NF17821_low_23
[»] chr8 (8 HSPs)
chr8 (57-240)||(8891316-8891497)
chr8 (17-57)||(12880742-12880782)
chr8 (17-56)||(1656128-1656167)
chr8 (17-56)||(6334067-6334106)
chr8 (17-57)||(37404695-37404735)
chr8 (17-58)||(24512791-24512832)
chr8 (17-58)||(413387-413428)
chr8 (17-57)||(36797646-36797685)
[»] chr4 (4 HSPs)
chr4 (17-58)||(22158565-22158606)
chr4 (19-58)||(45719896-45719935)
chr4 (17-57)||(25920182-25920222)
chr4 (17-56)||(51754426-51754465)
[»] chr3 (2 HSPs)
chr3 (17-58)||(3805193-3805234)
chr3 (17-58)||(37974812-37974853)
[»] chr7 (3 HSPs)
chr7 (17-57)||(39755385-39755425)
chr7 (110-194)||(3868978-3869062)
chr7 (17-56)||(5098410-5098449)
[»] scaffold0035 (1 HSPs)
scaffold0035 (17-56)||(80043-80082)
[»] chr5 (4 HSPs)
chr5 (17-56)||(31174100-31174139)
chr5 (17-56)||(28396490-28396529)
chr5 (17-53)||(27265689-27265725)
chr5 (17-56)||(24089355-24089394)
[»] chr6 (1 HSPs)
chr6 (17-58)||(13844992-13845033)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 57 - 240
Target Start/End: Complemental strand, 8891497 - 8891316
Alignment:
Q  57 ttcactaaaagatgtttatcatattctagtgcatagagagaagcacgacaatgattctcattcaaacttaatatggaacaaaccagtgcccctcgaagtc 156  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8891497 ttcattaaaagatgtttatcatattctagcgcatagagagaagcacgacaatgattctcattcaaacttaatatggaacaaaccagtgcccctcgaagtc 8891398  T
Q  157 tttttattagcgtggagaactctgaacaagaggatttcgataaaagagaatttggtacgccgtggagtggttcccttaggttct 240  Q
    |||||||||  ||| |||||| |||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||    
T  8891397 tttttatta--gtgaagaactatgaacaagaggatttcaataaattagaatttggtacgccgtggagtggttcccttaggttct 8891316  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 12880742 - 12880782
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacct 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12880742 aaattgcccatgagttttcaaaggcaacctaggcctcacct 12880782  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 1656167 - 1656128
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacc 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1656167 aaattgcccatgagttttcaaaggcaacctaggcctcacc 1656128  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 6334106 - 6334067
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacc 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6334106 aaattgcccatgagttttcaaaggcaacctaggcctcacc 6334067  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 37404695 - 37404735
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacct 57  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  37404695 aaattgcccatgagttttcaaaggcaacctaggtctcacct 37404735  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 24512832 - 24512791
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacctt 58  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  24512832 aaattgcccatgaattttcaaagacaacctaggcctcacctt 24512791  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 413428 - 413387
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacctt 58  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||    
T  413428 aaattacccatgaattttcaaaggcaacctagggctcacctt 413387  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 36797685 - 36797646
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacct 57  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  36797685 aaattgcccatgagttttcaaagacaa-ctaggcctcacct 36797646  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 22158606 - 22158565
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacctt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22158606 aaattgcccatgagttttcaaaggcaacctaggcctcacctt 22158565  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 45719896 - 45719935
Alignment:
Q  19 attgcccatgagttttcaaaggcaacctaggcctcacctt 58  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45719896 attgcccatgagttttcaaaggcaacctaggcctcacctt 45719935  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 25920222 - 25920182
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacct 57  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  25920222 aaattgcccatgagtcttcaaaggcaacctaggtctcacct 25920182  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 51754465 - 51754426
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacc 56  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  51754465 aaattgcccatgaatttttaaaggcaacctaggcctcacc 51754426  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 3805234 - 3805193
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacctt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3805234 aaattgcccatgagttttcaaaggcaacctaggcctcacctt 3805193  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 37974853 - 37974812
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacctt 58  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  37974853 aaattgcccatgagtcttcaaaggcaacctaggcctcacctt 37974812  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 39755385 - 39755425
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacct 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39755385 aaattgcccatgagttttcaaaggcaacctaggcctcacct 39755425  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 3868978 - 3869062
Alignment:
Q  110 attctcattcaaacttaatatggaacaaaccagtgcccctcgaagtctttttattagcgtggagaactctgaacaagaggatttc 194  Q
    |||||||||||||| |  |||||||||||   || || ||| |||| ||| ||||||||||||||||| | ||||||||||||||    
T  3868978 attctcattcaaacattctatggaacaaagttgtacctctcaaagtttttctattagcgtggagaactatcaacaagaggatttc 3869062  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 5098410 - 5098449
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacc 56  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  5098410 aaattgcccatgaattttcaaaggcaacctatgcctcacc 5098449  T

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Target: scaffold0035 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 80082 - 80043
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacc 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  80082 aaattgcccatgagttttcaaaggcaacctaggcctcacc 80043  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 31174100 - 31174139
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacc 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31174100 aaattgcccatgagttttcaaaggcaacctaggcctcacc 31174139  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 28396490 - 28396529
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacc 56  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  28396490 aaattgcccataagttttcaaaggcaacctaggcctcacc 28396529  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 27265689 - 27265725
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctc 53  Q
    |||||| ||||||||||||||||||||||||||||||    
T  27265689 aaattgtccatgagttttcaaaggcaacctaggcctc 27265725  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 24089394 - 24089355
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacc 56  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  24089394 aaattgaccatgaattttcaaaggcaacctaggcctcacc 24089355  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 13845033 - 13844992
Alignment:
Q  17 aaattgcccatgagttttcaaaggcaacctaggcctcacctt 58  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  13845033 aaattgcccatgagttttcaaaggcaacctaggtctcacctt 13844992  T

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