View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_low_30 (Length: 209)
Name: NF17821_low_30
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_low_30 |
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| [»] scaffold1476 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 5135843 - 5135698
Alignment:
| Q |
8 |
cgagtgaaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccacttatggcttacaggt |
107 |
Q |
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| T |
5135843 |
cgagtggaatgaatcaatggaagatagtaaagcaatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccatttttggcttacaagc |
5135744 |
T |
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| Q |
108 |
cgctctgtcattgtctgatttttggtctgtagtttctagattttat |
153 |
Q |
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| T |
5135743 |
tgctctgtcattgtctgatttttggtctgtagtttctagattttat |
5135698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 5100742 - 5100594
Alignment:
| Q |
8 |
cgagtgaaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccacttatggcttacaggt |
107 |
Q |
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| T |
5100742 |
cgagtggaatgaatcaatgaaagatagtaatgcaatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccatttttggcttacaagc |
5100643 |
T |
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| Q |
108 |
cgctctgtcattgtctgatttttggtctgtagtttctagattttatcct |
156 |
Q |
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| T |
5100642 |
tgctttgtcattgtctgatttttggtctgtagtttctagattttatcct |
5100594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 5351780 - 5351855
Alignment:
| Q |
25 |
tgaaagatagtaaagcgatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccacttatggct |
100 |
Q |
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| T |
5351780 |
tgaaagatagtaaagcaatggcggagcaaaaatcaattttatggtgacggctaacaattgttttccatttttggct |
5351855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1476 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1476
Description:
Target: scaffold1476; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 174 - 228
Alignment:
| Q |
8 |
cgagtgaaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaatt |
62 |
Q |
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| T |
174 |
cgagtggagtgaatcaatgaaagatggtaaaacaatggcggagcaaaaatcaatt |
228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 39362477 - 39362509
Alignment:
| Q |
163 |
attattctggtaaactgaagtttggttgaacat |
195 |
Q |
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| T |
39362477 |
attattgtggtaaactgaagtttggttgaacat |
39362509 |
T |
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