View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_low_4 (Length: 607)
Name: NF17821_low_4
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_low_4 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 551; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Complemental strand, 7425666 - 7425088
Alignment:
| Q |
11 |
cacagacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacacagcgtaaataatctgtgatgttacag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7425666 |
cacagacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacacagcataaataatctgtgatgttacag |
7425567 |
T |
|
| Q |
111 |
agacatgccctaggacttaaagagctaggt-ttaaaaaggtccgccacaattttaatacaagagcctccaatcacctagttggcataaccaagaaagaac |
209 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425566 |
agaaatgccctaggacttaaagagctaggtgttaaaaaggtccgccacaattttaatacaagagcctccaatcacctagttggcataaccaagaaagaac |
7425467 |
T |
|
| Q |
210 |
ctgaaccaacaacatcaggttcaagcaatacaaaacacaaaagaaaaaccacctgaatcaagcgaaatcattttggttgggcaatgccaatcaatgttgt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7425466 |
ctgaaccaacaacatcaggttcaagcaatacaaaacacaaaagaaaaaccacctgaatcaagcaaaatcattttggttgggcaatgccaatcaatgttgt |
7425367 |
T |
|
| Q |
310 |
caacaccagaagctacaatacataaataaatgggacagaaacttcttaataggtaactacattcatgataagcaagggaccacgacattcttaaacttca |
409 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425366 |
caacacaagaagctacaatacataaataaatgggacataaacttcttaataggtaactacattcatgataagcaagggaccacgacattcttaaacttca |
7425267 |
T |
|
| Q |
410 |
acacctttaacttgccatgtttctaatatatagtagcatatccccctttattcatcgaccaatcactcattgttgcaaaattccaacaccttgagttata |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425266 |
acacctttaacttgccatgtttctaatatatagtagcatatccccctttattcatcgaccaatcactcattgttgcaaaattccaacaccttgagttata |
7425167 |
T |
|
| Q |
510 |
gggaagtctctcttattaacaaacaagcagcacctaaagcacacctaagttaagaaaatagtaggcataacgttctcaa |
588 |
Q |
| |
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| T |
7425166 |
gggaagtctctcttattaacaaacaagcagcacctaaagcacacctaagttaagaaaatagtaggcataacgttctcaa |
7425088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 188 - 542
Target Start/End: Original strand, 11356823 - 11357179
Alignment:
| Q |
188 |
gttggcataaccaagaaagaacctgaaccaacaacatcaggttcaagcaatacaaaacacaaaagaaaaaccacctgaa-tcaagcgaaatcattttggt |
286 |
Q |
| |
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|||| ||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||| || | |||| ||||||||||||| |
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| T |
11356823 |
gttgacataaccaa-aaagaccctgaactaacaacactaggttcaagcaatacaaaacaccaaagaaataccacctaaaataaagcaaaatcattttggt |
11356921 |
T |
|
| Q |
287 |
tgggcaatgccaatcaatgttgtcaacaccagaagctacaatacataaataaatgggaca--gaaacttcttaataggtaactacattcatgataagcaa |
384 |
Q |
| |
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||||| || ||| || | || || ||||| || |||| ||| ||||||||||| ||| || ||||||| ||||||||| |||| || || |||| |
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| T |
11356922 |
ggggcattgtcaaccattaatgacagcaccacaatgtacactacgtaaataaatggcacacagagacttcttgttaggtaactccattgatcatgagcat |
11357021 |
T |
|
| Q |
385 |
gggaccacgacattcttaaacttcaacacctttaacttgccatgtttctaatatatagtagcatatccccctttattcatcgaccaatcactcattgttg |
484 |
Q |
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|||||||||| |||||||||||||||||||| || || ||||||| ||||||||||||||||||| || |||||| |||| ||||| |||||||||||| |
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| T |
11357022 |
tggaccacgaccttcttaaacttcaacaccttaaattttccatgttcctaatatatagtagcatattccgctttatccatcaaccaaccactcattgttg |
11357121 |
T |
|
| Q |
485 |
caaaattccaacaccttgagttatagggaagtctctcttattaacaaacaagcagcac |
542 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |
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| T |
11357122 |
caaaattccaacaccttgagttataaggaagtctctcttatcaacaaataagcagcac |
11357179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 555 - 588
Target Start/End: Original strand, 11357210 - 11357243
Alignment:
| Q |
555 |
taagttaagaaaatagtaggcataacgttctcaa |
588 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
11357210 |
taagttaagaaaatagtaggcataacgttctcaa |
11357243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 314 - 588
Target Start/End: Complemental strand, 12490904 - 12490614
Alignment:
| Q |
314 |
accagaagctacaatacataaataaatgggacagaaa--cttcttaataggtaactacattcatgataagcaagggaccacgacattcttaaacttcaac |
411 |
Q |
| |
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|||| |||||||| ||||| ||||||||||||| ||| |||||| |||||||||| |||||| ||||| | |||||||||| ||||||||||||||| |
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| T |
12490904 |
accacaagctacactacatgaataaatgggacataaagacttcttgataggtaactcaattcataataagtagaggaccacgaccttcttaaacttcaac |
12490805 |
T |
|
| Q |
412 |
acctttaacttgccatgtttctaatatatagtagcatatccccctttattcatcgaccaatcactcattgttgcaaaattccaacaccttgagttatagg |
511 |
Q |
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| T |
12490804 |
accttaaatttgtcatgttcctaatatatagtagcatattcccctttatccatcaaccaaccactcattgttgcaaaattccaacaccttgagttatagg |
12490705 |
T |
|
| Q |
512 |
gaagtctctcttattaacaaacaagcagcac--------------ctaaagcacacctaagttaagaaaatagtaggcataacgttctcaa |
588 |
Q |
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|||||||||||||| |||||||||||| ||| | ||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
12490704 |
gaagtctctcttatcaacaaacaagcaacactaaaaggcttgtcaccaaagcacacataagttaagaatatagtaggcataacgttctcaa |
12490614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 18068 - 18139
Alignment:
| Q |
14 |
agacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacaca |
85 |
Q |
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||||| |||||| |||||||||||||||||| || || ||| ||||| | ||||||||||||||||||||| |
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| T |
18068 |
agacacaccccctcctcagactatgaatcaaaaaactgccaaactgccgcaacttcggatatttcagacaca |
18139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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