View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17821_low_6 (Length: 534)
Name: NF17821_low_6
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 24624677 - 24624152
Alignment:
| Q |
1 |
tgggggttcatatcatcctttgcaactctttttggtttcctagacaggttgagtatgtaattgcgtccttctagaaaaagagatctagaaatctcctcaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24624677 |
tgggtgttcatatcatcctttgcaactctttttggtttcctagacaggttgagtatgtaattgcgtccttctagaaaaagagatcttgaaatctcctcaa |
24624578 |
T |
|
| Q |
101 |
gattcaaattctcccagttcatctgctgataaaaagcacatgatgcatctccttagaggttgatcgaatttcctagatattatttatggcaacttgatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24624577 |
gattcaaattctcccagttcatctgctgataaaaagcacatgatgcatctccttggaggttgatcgaatttcctagatattatttatggcaacttgatca |
24624478 |
T |
|
| Q |
201 |
aaacggatgtttcgtccacgaaccacattggtgaaagaaaagggttcatcatcggatggaagagcattgacatatatctcccggatcacatcattattta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24624477 |
aaacggatgtttcgtccacgaaccacattggtgaaagaaaagggttcatcatcggatggaagagcattgacatatatctcccggattacatcattattta |
24624378 |
T |
|
| Q |
301 |
gaagcttgggaagatctaccaacttatcccaattcctggtgtggattatt--tgctatgcccatatacggtcctttttctttgattcagaattccttctc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24624377 |
gaagcttgggaagatctaccaacttatcccaattcctggtgtagattatttgtgctatgcccatacacggtcctttttctttgattcagaattccttctc |
24624278 |
T |
|
| Q |
399 |
cacccacatttcccgctccaccaactctctgcattgttcttgttggtaagtaccttcgaattttaaaggataaaatggttcttgtgcacgtgcccttgaa |
498 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24624277 |
cacccacatttcccgctccaccaacgttctgcattgttcttgttggtaagtacctttgaattttaaaggataaaatggttcttgtgcgcgtgcccttgaa |
24624178 |
T |
|
| Q |
499 |
gaactagctgcattaattcttttcac |
524 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
24624177 |
gaactagctgcattaattcttttcac |
24624152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University