View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17821_low_8 (Length: 443)
Name: NF17821_low_8
Description: NF17821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17821_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 158 - 283
Target Start/End: Complemental strand, 52162378 - 52162254
Alignment:
| Q |
158 |
tcctgtgcttgaaagtcagtcgtttccgtatcatttttcttgaatgattttaattttacttcttnnnnnnncgttttaaaattagcatatattaaaaaga |
257 |
Q |
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| T |
52162378 |
tcctgtgcttgaaagtcagtcgtttccgtatcatttttcttgaatgattttaattttacttctt-aaaaaacgttttaaaattagcatacatcaaaaaga |
52162280 |
T |
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| Q |
258 |
atgttcacaaatgttttaaagtccat |
283 |
Q |
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| T |
52162279 |
atgttcacaaatgttttaaagtccat |
52162254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 52162495 - 52162415
Alignment:
| Q |
19 |
attaggttctttgttttaaatccttgttattccattgtttgaaatgtttacttttgtttatgaatatgaactattacattg |
99 |
Q |
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| T |
52162495 |
attaggttctttgttttaaatccttgttattccattgtttgaaatgtttacttttgtttatgaatatgaactattacattg |
52162415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 357 - 426
Target Start/End: Complemental strand, 52162186 - 52162117
Alignment:
| Q |
357 |
ggaacaatagtaagtagattgatagatatttatagaaaattttccctattccaaaccatttccttatttt |
426 |
Q |
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| T |
52162186 |
ggaacaatagtaagtagattgatagatatttataaaaaaaattccctatttcaaaccatttccttatttt |
52162117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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