View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17822_high_2 (Length: 657)

Name: NF17822_high_2
Description: NF17822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17822_high_2
NF17822_high_2
[»] chr6 (18 HSPs)
chr6 (1-284)||(1096633-1096916)
chr6 (333-475)||(1096965-1097107)
chr6 (88-271)||(1128133-1128314)
chr6 (544-642)||(1097177-1097275)
chr6 (88-267)||(1117651-1117832)
chr6 (122-243)||(1105500-1105621)
chr6 (122-243)||(1086542-1086666)
chr6 (123-271)||(1102344-1102495)
chr6 (544-642)||(1128817-1128929)
chr6 (544-597)||(1118198-1118251)
chr6 (154-218)||(1072426-1072491)
chr6 (544-642)||(1102792-1102900)
chr6 (603-642)||(1118298-1118337)
chr6 (158-241)||(7421381-7421464)
chr6 (545-608)||(1087190-1087249)
chr6 (27-92)||(1102242-1102307)
chr6 (128-207)||(1150828-1150907)
chr6 (12-85)||(1105383-1105456)
[»] chr4 (1 HSPs)
chr4 (88-271)||(8116740-8116921)
[»] chr7 (3 HSPs)
chr7 (130-241)||(26584286-26584397)
chr7 (127-241)||(26570826-26570939)
chr7 (172-241)||(26576412-26576481)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 1096633 - 1096916
Alignment:
Q  1 agtgaagtttgtataagaaatgcgacaaattaagtgcacgaaaagatcaacatagcacatggatgcaatcaagagatatttaattattttatggtgtcta 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||||||||||||||  |||||||||||||||    
T  1096633 agtgaagtttgtataagaaatgcgacaaattaaatgcacgaaaagacaaacatggcacatggatgcaatcaagagatatttaaccattttatggtgtcta 1096732  T
Q  101 atgattatcccttaaaaaggagtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatctaaaggagaagaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  1096733 atgattatcccttaaaaaggagtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttattacatttaaaggagaagaaa 1096832  T
Q  201 catgactacatttctcaaagttgcttatattatgatcatatgtgtctttgtgcttcaccttgcagcccaagttgattcacgtac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1096833 catgactacatttctcaaagttgcttatattatgatcatatgtgtctttgtgcttcaccttgcagcccaagttgattcacgtac 1096916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 333 - 475
Target Start/End: Original strand, 1096965 - 1097107
Alignment:
Q  333 catctccttgttgacactaattatttatggtttacattgtagaaaaaagattacatggatgcaaggaagacagagattgtgataacgtctgctccgtaca 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1096965 catctccttgttgacactaattatttatggtttacattgtagaaaaaagattacatggatgcaaggaagacagagattgtgataacatctgctccgtaca 1097064  T
Q  433 tgctgttacaaagtgcattgggaatatgtgtcgctgcttagcc 475  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1097065 tgctgttacaaagtgcattgggaatatgtgtcgctgcttagcc 1097107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 88 - 271
Target Start/End: Original strand, 1128133 - 1128314
Alignment:
Q  88 tttatggtgtctaatgattatcccttaaaaaggagtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatct 187  Q
    ||||||||||||| ||||||||   ||||||||  |||||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||||    
T  1128133 tttatggtgtctactgattatcttgtaaaaagg--tatttgccaatatataagtgctaaaaactagaaaataatcaaacaattttctttttgttacatct 1128230  T
Q  188 aaaggagaagaaacatgactacatttctcaaagttgcttatattatgatcatatgtgtctttgtgcttcaccttgcagcccaag 271  Q
    ||||||||||||||||||||||| |||||||  |||||||| |||||||||||||| | ||| |||||||  ||||||||||||    
T  1128231 aaaggagaagaaacatgactacaattctcaagtttgcttatgttatgatcatatgtctttttctgcttcaggttgcagcccaag 1128314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 544 - 642
Target Start/End: Original strand, 1097177 - 1097275
Alignment:
Q  544 catgattatcacataattatattcattcaagcatttataagcatacatgagtctattagatacaaattacattaacctaatacatttttgtgtggctac 642  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1097177 catgattatcacataattatattcattcaagcatttataagcatacatgagtctattagatacaaattacattaacctaatacatttttgtgtggctac 1097275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 88 - 267
Target Start/End: Original strand, 1117651 - 1117832
Alignment:
Q  88 tttatggtgtctaatgattatcccttaaaaaggagtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatct 187  Q
    ||||||||||||| ||||||||   ||||| || ||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||     
T  1117651 tttatggtgtctattgattatcatgtaaaaggg-gtatttgccaatatataagtgctaaaaactaagaaatgatcatacaattttctatttgttacatcc 1117749  T
Q  188 aaaggagaagaaacatgactacatttctcaaagttgctta---tattatgatcatatgtgtctttgtgcttcaccttgcagcc 267  Q
    |||||||||||||||||||| || ||||||| ||||||||   |||||||||||||||| | ||| ||||||||  |||||||    
T  1117750 aaaggagaagaaacatgactgcaattctcaaggttgcttatattattatgatcatatgtctttttctgcttcacgatgcagcc 1117832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 1105500 - 1105621
Alignment:
Q  122 gtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatctaaaggagaagaaacatgactacatttctcaaagt 221  Q
    |||||| |||||||||||||| ||||| ||| |||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||||| |    
T  1105500 gtatttaccaatatataagtgttaaaaactaagaaatgataaaacaattttctgtttgttacatccaaatgagaagaaacatgactacaattctcaaatt 1105599  T
Q  222 tgcttatattatgatcatatgt 243  Q
    | ||||||||||| ||||||||    
T  1105600 tccttatattatggtcatatgt 1105621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 1086542 - 1086666
Alignment:
Q  122 gtatttgccaatatataagtgctaaaacctaggaaatgatcaaa-caattttctatttgttaca--tctaaaggagaagaaacatgactacatttctcaa 218  Q
    |||||||||| |||||||||||| ||| |||||||||||||||| || ||||| ||||||||||  |||||||||||| ||||||||||||| |||||||    
T  1086542 gtatttgccagtatataagtgctgaaaactaggaaatgatcaaaacagttttcgatttgttacacatctaaaggagaataaacatgactacaattctcaa 1086641  T
Q  219 agttgcttatattatgatcatatgt 243  Q
      ||||||| |||||||||||||||    
T  1086642 gtttgcttacattatgatcatatgt 1086666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 1102344 - 1102495
Alignment:
Q  123 tatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatcta----aaggagaagaaacatgactacatttctcaa 218  Q
    ||||| ||||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    || |  |||||||||||||||| |||| ||    
T  1102344 tatttcccaatatataaatgctaaaac-taggatatgatcaaacaattttcaatttgttacatctaaactaaagcaaagaaacatgactacaattctaaa 1102442  T
Q  219 agttgcttatattatgatcatatgtgtctttgtgcttcaccttgcagcccaag 271  Q
      |||||||||||||||| | |||| | ||  |||||||| ||||||||||||    
T  1102443 gtttgcttatattatgattacatgtcttttcctgcttcacattgcagcccaag 1102495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 544 - 642
Target Start/End: Original strand, 1128817 - 1128929
Alignment:
Q  544 catgattatcacataattatattcattcaagcatttataagcatacatgagtctattagata--------------caaattacattaacctaatacatt 629  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||    
T  1128817 catgattatcacataattatattcatttatgcatttataagcatacatgagtctattagatagaattttaggcatacaaattacattaacctaatacatt 1128916  T
Q  630 tttgtgtggctac 642  Q
     ||||||||||||    
T  1128917 gttgtgtggctac 1128929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 544 - 597
Target Start/End: Original strand, 1118198 - 1118251
Alignment:
Q  544 catgattatcacataattatattcattcaagcatttataagcatacatgagtct 597  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1118198 catgattatcacataattatattcattcatgcatttataagcatacatgagtct 1118251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 1072426 - 1072491
Alignment:
Q  154 gaaatgatcaaacaattttctat-ttgttacatctaaaggagaagaaacatgactacatttctcaa 218  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  1072426 gaaatggtcaaacaattttctatcttgttacatttaaaggagaagaaacatgactacaattctcaa 1072491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 544 - 642
Target Start/End: Original strand, 1102792 - 1102900
Alignment:
Q  544 catgattatcacataattatattcattcaagcatttataagcatacatgagtctattag--------------atacaaattacattaacctaatacatt 629  Q
    ||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||              ||||||||||||| |||||||||||||    
T  1102792 catgattatcacataattatattcat----gcatttgtaagcatacatgagtctattagagacaattctaggcatacaaattacatcaacctaatacatt 1102887  T
Q  630 tttgtgtggctac 642  Q
    |||||||||||||    
T  1102888 tttgtgtggctac 1102900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 603 - 642
Target Start/End: Original strand, 1118298 - 1118337
Alignment:
Q  603 atacaaattacattaacctaatacatttttgtgtggctac 642  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1118298 atacaaattacattaacctaatacatttttgtgtggctac 1118337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 7421464 - 7421381
Alignment:
Q  158 tgatcaaacaattttctatttgttacatctaaaggagaagaaacatgactacatttctcaaagttgcttatattatgatcatat 241  Q
    |||||||||||| ||||||||| ||||  ||||| |||||||||||| ||  | |||||||| ||| |||||||||||||||||    
T  7421464 tgatcaaacaatcttctatttgctacacataaagaagaagaaacatggctgtaattctcaaatttgtttatattatgatcatat 7421381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 545 - 608
Target Start/End: Original strand, 1087190 - 1087249
Alignment:
Q  545 atgattatcacataattatattcattcaagcatttataagcatacatgagtctattagatacaa 608  Q
    |||||||||||||||||||||| ||    |||||||||||||||||||||||| ||||||||||    
T  1087190 atgattatcacataattatattaat----gcatttataagcatacatgagtctgttagatacaa 1087249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 1102242 - 1102307
Alignment:
Q  27 aaattaagtgcacgaaaagatcaacatagcacatggatgcaatcaagagatatttaattattttat 92  Q
    ||||| ||||||||||||||  ||||   |||||||||  ||||||||||||||||||||||||||    
T  1102242 aaattgagtgcacgaaaagacaaacacgacacatggatataatcaagagatatttaattattttat 1102307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 1150828 - 1150907
Alignment:
Q  128 gccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatctaaaggagaagaaacatgact 207  Q
    |||||||||||  |||||||| |||| |||||||||| ||| |||||||||| ||||   ||| ||||| ||||||||||    
T  1150828 gccaatatatatatgctaaaagctagaaaatgatcaatcaactttctatttgatacaagcaaatgagaataaacatgact 1150907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 1105383 - 1105456
Alignment:
Q  12 tataagaaatgcgacaaattaagtgcacgaaaagatcaacatagcacatggatgcaatcaagagatatttaatt 85  Q
    |||||||||||| | |||||||  ||| |||||||  ||||   ||||||||| ||||||||||||||||||||    
T  1105383 tataagaaatgcaataaattaatcgcatgaaaagacaaacacgacacatggatacaatcaagagatatttaatt 1105456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 88 - 271
Target Start/End: Original strand, 8116740 - 8116921
Alignment:
Q  88 tttatggtgtctaatgattatcccttaaaaaggagtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatct 187  Q
    ||||||||||||| |||||| ||  |||||| |  |||||| |||||||||||||||||||  ||||||||||||||||||||| || || |||| ||      
T  8116740 tttatggtgtctattgattaccctgtaaaaatg--tatttgtcaatatataagtgctaaaaattaggaaatgatcaaacaatttacttttcgttatatgc 8116837  T
Q  188 aaaggagaagaaacatgactacatttctcaaagttgcttatattatgatcatatgtgtctttgtgcttcaccttgcagcccaag 271  Q
    ||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||| ||  ||||| || ||||||||||||    
T  8116838 aaaggagcagaaacatgactacaattttcaaatttgcttatattatgatcatatgtgttttcctgcttaacattgcagcccaag 8116921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 26584286 - 26584397
Alignment:
Q  130 caatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatctaaaggagaagaaacatgactacatttctcaaagttgcttata 229  Q
    |||||||||||||||| || |||  || || |||||||||| ||||||||||||||  ||| ||||||||| ||| || || |||| ||  ||| |||||    
T  26584286 caatatataagtgctacaaactataaagtggtcaaacaattatctatttgttacatgcaaaagagaagaaatatggctgcaattcttaagtttgtttata 26584385  T
Q  230 ttatgatcatat 241  Q
    ||||||||||||    
T  26584386 ttatgatcatat 26584397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 26570826 - 26570939
Alignment:
Q  127 tgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatctaaaggagaagaaacatgactacatttctcaaagttgctt 226  Q
    |||||||||| |||||||||||  ||  || || |||||||||| |||||||||||||   ||||||||||||| ||| |  || |||| ||  ||| ||    
T  26570826 tgccaatata-aagtgctaaaaaataaaaagtggtcaaacaattatctatttgttacacacaaaggagaagaaatatggcatcaattcttaagtttgttt 26570924  T
Q  227 atattatgatcatat 241  Q
    |||||||||||||||    
T  26570925 atattatgatcatat 26570939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 26576412 - 26576481
Alignment:
Q  172 tctatttgttacatctaaaggagaagaaacatgactacatttctcaaagttgcttatattatgatcatat 241  Q
    ||||||||||||||  ||||||||||||||||| | | | |||| ||  ||| |||||||||||||||||    
T  26576412 tctatttgttacatgcaaaggagaagaaacatggcaatacttcttaagtttgtttatattatgatcatat 26576481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University