View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17822_high_3 (Length: 370)
Name: NF17822_high_3
Description: NF17822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17822_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 195 - 370
Target Start/End: Complemental strand, 38556779 - 38556615
Alignment:
| Q |
195 |
ccgattgaagcaacaataacagctt-caattgcatgaaaaccgttctagatagagtaacaaattgttgaactagtttagatgaaatcagagaatcgaagc |
293 |
Q |
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| T |
38556779 |
ccgattgaagcaacaagaacagctttcaattgcatgaaaaccgttctagatagagtaacaaattgttgaactagtttagatgaaatcagagaatcgaagc |
38556680 |
T |
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| Q |
294 |
ataaaaattggaataaaaattctggaatctgagaattttctcgggaaacatagagagagagggaaaaggaaaaggaa |
370 |
Q |
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| T |
38556679 |
ataaa------------aattctggaatctgagaattttctcgggaaacagagagagagagagagaaggaaaaggaa |
38556615 |
T |
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Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38556973 - 38556888
Alignment:
| Q |
1 |
ctcctgaagatccaaataaataattaaaaactctaacatcataaatcaataattcaatccaccagatcaagattcaaattcacatc |
86 |
Q |
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| T |
38556973 |
ctcctgaagatccaaataaataattaaaaactctaacatcataaatcaataattcaatccaccagatcaagattcaaattcacatc |
38556888 |
T |
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