View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17822_high_8 (Length: 274)

Name: NF17822_high_8
Description: NF17822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17822_high_8
NF17822_high_8
[»] chr4 (3 HSPs)
chr4 (1-220)||(39668653-39668872)
chr4 (84-198)||(19440255-19440370)
chr4 (144-188)||(19432028-19432072)
[»] scaffold0458 (1 HSPs)
scaffold0458 (81-185)||(139-242)
[»] chr1 (1 HSPs)
chr1 (81-185)||(39474115-39474218)
[»] chr6 (2 HSPs)
chr6 (16-70)||(34208725-34208780)
chr6 (16-68)||(26948350-26948402)
[»] chr3 (2 HSPs)
chr3 (16-84)||(27647002-27647070)
chr3 (16-80)||(43902285-43902349)
[»] chr7 (2 HSPs)
chr7 (20-66)||(12484141-12484187)
chr7 (20-66)||(12505571-12505617)
[»] chr5 (1 HSPs)
chr5 (96-201)||(33275800-33275905)
[»] chr2 (1 HSPs)
chr2 (38-80)||(18593422-18593464)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39668653 - 39668872
Alignment:
Q  1 atgtatggttattttattcgacatttttgatgtcttaacatcgtatacgacatttgtccactacgtgccagaatatcaatattgaatgattactaactat 100  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39668653 atgtatggttattgcattcgacatttttgatgtcttgacatcgtatacgccatttgtccactacgtgccagaatatcaatattgaatgattactaactat 39668752  T
Q  101 aacttttaaacttgatctaatgtaagttttcaatcgataaaacttttagacatattgtattatttgattgtgattttagaaattaacgttaataaaactt 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39668753 aacttttaaacttgatctaatgtaagttttcaatcgataatacttttagacatattgtattatttgattgtgattttagaaattaacgttcataaaactt 39668852  T
Q  201 tgatgatttttattgtcttg 220  Q
    ||||||||||||||||||||    
T  39668853 tgatgatttttattgtcttg 39668872  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 19440370 - 19440255
Alignment:
Q  84 gaatgattactaactataacttttaaacttgatctaatgtaagttttcaatcga-taaaacttttagacatattgtattatttgattgtgattttagaaa 182  Q
    ||||||||| |||| | |||||| ||||||||| | || ||  | ||||||| | ||| | |||||||||||||| ||||||||||||||||| || ||     
T  19440370 gaatgattattaaccacaactttcaaacttgatatgatatacttgttcaatcaaataataattttagacatattggattatttgattgtgattctaaaag 19440271  T
Q  183 ttaacgttaataaaac 198  Q
    |||||| | |||||||    
T  19440270 ttaacggttataaaac 19440255  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 19432072 - 19432028
Alignment:
Q  144 ttttagacatattgtattatttgattgtgattttagaaattaacg 188  Q
    |||||||||||||| ||||||||||||||||| || || ||||||    
T  19432072 ttttagacatattggattatttgattgtgattctaaaagttaacg 19432028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 139 - 242
Alignment:
Q  81 attgaatgattactaactataacttttaaacttgatctaatgtaagttttcaatcgataaaacttttagacatattgtattatttgattgtgattttaga 180  Q
    ||||||||||| ||||| ||||  ||| |||| ||||||||||||   |||||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  139 attgaatgatttctaaccataatctttgaactcgatctaatgtaatggttcaatcgataatagttttagacatattgta-tatttgattgtgattttaga 237  T
Q  181 aatta 185  Q
    |||||    
T  238 aatta 242  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 39474218 - 39474115
Alignment:
Q  81 attgaatgattactaactataacttttaaacttgatctaatgtaagttttcaatcgataaaacttttagacatattgtattatttgattgtgattttaga 180  Q
    ||||||||||| ||||| ||||  ||| |||| ||||||||||||   |||||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  39474218 attgaatgatttctaaccataatctttgaactcgatctaatgtaatggttcaatcgataatagttttagacatattgta-tatttgattgtgattttaga 39474120  T
Q  181 aatta 185  Q
    |||||    
T  39474119 aatta 39474115  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 34208780 - 34208725
Alignment:
Q  16 attcgacatttt-tgatgtcttaacatcgtatacgacatttgtccactacgtgcca 70  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||    
T  34208780 attcgacattttctgatgtcttcacatcatatacgacatttgtccactacgtgcca 34208725  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 26948350 - 26948402
Alignment:
Q  16 attcgacatttttgatgtcttaacatcgtatacgacatttgtccactacgtgc 68  Q
    ||||||||||| ||||||||||||||| ||||| | || ||||||||||||||    
T  26948350 attcgacatttctgatgtcttaacatcatatacaaaatatgtccactacgtgc 26948402  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 27647002 - 27647070
Alignment:
Q  16 attcgacatttttgatgtcttaacatcgtatacgacatttgtccactacgtgccagaatatcaatattg 84  Q
    |||||||||| ||||| |||| |||||||||||||||| ||||| |||||||||| ||| ||| |||||    
T  27647002 attcgacattcttgatatcttgacatcgtatacgacatctgtcccctacgtgccataatttcactattg 27647070  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 43902285 - 43902349
Alignment:
Q  16 attcgacatttttgatgtcttaacatcgtatacgacatttgtccactacgtgccagaatatcaat 80  Q
    ||||||||||| ||||||  | |||||||||||||||| |||||||||||| | ||||| |||||    
T  43902285 attcgacatttatgatgttctgacatcgtatacgacatatgtccactacgttctagaatttcaat 43902349  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 12484187 - 12484141
Alignment:
Q  20 gacatttttgatgtcttaacatcgtatacgacatttgtccactacgt 66  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  12484187 gacatttctgatgtcttgacatcgtatacgacatttatccactacgt 12484141  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 12505617 - 12505571
Alignment:
Q  20 gacatttttgatgtcttaacatcgtatacgacatttgtccactacgt 66  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  12505617 gacatttctgatgtcttgacatcgtatacgacatttatccactacgt 12505571  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 33275800 - 33275905
Alignment:
Q  96 actataacttttaaacttgatctaatgtaagttttcaatcgataaaacttttagacatattgtattatttgattgtgattttagaaattaacgttaataa 195  Q
    |||||||||||| ||||  ||||||| ||| | ||||||| | || |  |||| |||||||||||||| | ||| | |||||||||| ||||||| ||||    
T  33275800 actataacttttgaactcaatctaatataattattcaatcaacaataactttaaacatattgtattatcttattataattttagaaactaacgttcataa 33275899  T
Q  196 aacttt 201  Q
    ||||||    
T  33275900 aacttt 33275905  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 18593464 - 18593422
Alignment:
Q  38 acatcgtatacgacatttgtccactacgtgccagaatatcaat 80  Q
    |||||||||||||||| ||||| |||||||||||||| |||||    
T  18593464 acatcgtatacgacatatgtcctctacgtgccagaatttcaat 18593422  T

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