View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17822_low_12 (Length: 231)
Name: NF17822_low_12
Description: NF17822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17822_low_12 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 1452064 - 1451842
Alignment:
| Q |
9 |
agcagagataatgaaaataggactaattttttaagcatgcacttttgtatattgcagatttgattaaagtgtaatggtaatgttgtagaggctacaaaac |
108 |
Q |
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| T |
1452064 |
agcagtgataatgaaaataggactacttttttaagcatgcacttttgtatattgcagatttgattaaagtgtaatggtaatgttgtagaggctacaaaac |
1451965 |
T |
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| Q |
109 |
ttactacattttgcattggaaaacacacaaaaaaggatggtgaacaaggtaaaggtagnnnnnnnttgaaaccaacataannnnnnngcagatcaaagat |
208 |
Q |
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| T |
1451964 |
ttactacgttttgcattggaaaacacacaaaaaaggatggtgaacaaggtaaaggtagaaaaaaattgaaaccaacataatttttttgcagatcaaagat |
1451865 |
T |
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| Q |
209 |
atgagaataatgaaagtatgtca |
231 |
Q |
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| T |
1451864 |
atgagaataatgaaagtatgtca |
1451842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 1445891 - 1445667
Alignment:
| Q |
9 |
agcagagataatgaaaataggactaattttttaagcatgcacttttgtatattgcagatttgattaaagtgtaatggtaatgttgtagaggctacaaaac |
108 |
Q |
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| T |
1445891 |
agcagcgataatgaaaataggactacttttttaagcatgcacttttgtatattgcagctttgctataagtgtaatggtcatgttgaagaggctccaaaat |
1445792 |
T |
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| Q |
109 |
ttactacattttgcattggaaaacacacaaaaaaggatggtgaacaaggtaaaggtagnnnnnnnttgaaaccaacataa--nnnnnnngcagatcaaag |
206 |
Q |
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| T |
1445791 |
ctactacattttgcatcggaaaacacacaaaaatgtatattgaacagggtaaaggtagaaaaaaattgaaatcaacataaataaattttgcagatcaaag |
1445692 |
T |
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| Q |
207 |
atatgagaataatgaaagtatgtca |
231 |
Q |
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| T |
1445691 |
atatgagaataacgaaagtatgtca |
1445667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 1433321 - 1433178
Alignment:
| Q |
89 |
tgttgtagaggctacaaaacttactacattttgcattggaaaacacacaaaaaaggatggtgaacaaggtaaaggtagnnnnnnnttgaaaccaacataa |
188 |
Q |
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| T |
1433321 |
tgttgtagaggctacaaattctaccacattttgcatcgagaaacacacaaaaaa-gatgttgaacaaggtagaagaagaaaataattgaaaccaacataa |
1433223 |
T |
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| Q |
189 |
--nnnnnnngcagatcaaagatatgagaataatgaaagtatgtca |
231 |
Q |
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| T |
1433222 |
ataaattttgcagatcaaagatatgagaataaggaaagcatgtca |
1433178 |
T |
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