View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17822_low_13 (Length: 224)
Name: NF17822_low_13
Description: NF17822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17822_low_13 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0238 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12603538 - 12603762
Alignment:
| Q |
1 |
aggatttttacagattgaaagtga-cagagaaaataatgggaatctcaaactggaggcnnnnnnnnntaaactgaaatttgtaacctctacaggaagcct |
99 |
Q |
| |
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|||||||| ||||||||||||||| || |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12603538 |
aggattttgacagattgaaagtgaacaaagaaaatagtgggaatttcaaactggaggcaaaaaaaaataaactgaaatttgtaacctctacaggaagcct |
12603637 |
T |
|
| Q |
100 |
ttaatttcaaaggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaatgaatgataaataaacatcatacaaaacccataagcatc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12603638 |
ttaatttcaaaggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaatgaatgataaataaacatcatacaaaacccataagcatc |
12603737 |
T |
|
| Q |
200 |
atgaaaaatataatagaggagataa |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
12603738 |
atgaaaaatataatagaggagataa |
12603762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 23262100 - 23261874
Alignment:
| Q |
1 |
aggatttttacagattgaaagtga-cagagaaaataatgggaatctcaaactggaggcnnnnnnnnntaaactgaaatttgtaacctctacaggaagcct |
99 |
Q |
| |
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||||||||| ||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
23262100 |
aggatttttttagattgaaagtgaacaaagaaaatagtgggaatctcaaactggaggcaaaaacaataaaactgaaatatgtaacctctacaggaagcct |
23262001 |
T |
|
| Q |
100 |
ttaa-tttcaaa-ggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaatgaatgataaataaacatcatacaaaacccataagca |
197 |
Q |
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| || ||||||| |||||||| |||||||||||||||| | || ||||||| ||||||||| ||||||||||| |||| || ||||||||||||||| |
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| T |
23262000 |
tcaaatttcaaaaggttcagactacaaattggtttgcaaagtaagttgaaaacagtgcaaaaataaatgataaatatacataatgcaaaacccataagca |
23261901 |
T |
|
| Q |
198 |
tcatgaaaaatataatagaggagataa |
224 |
Q |
| |
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|||||||||||| |||||||||||||| |
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| T |
23261900 |
tcatgaaaaataaaatagaggagataa |
23261874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10453565 - 10453342
Alignment:
| Q |
1 |
aggatttttacagattgaaagtga-cagagaaaataatgggaatctcaaactggaggcnnnnnnnnntaaactgaaatttgtaacctctacaggaagcct |
99 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
10453565 |
aggatttttacagattgaaagtgaacaaagaaaatagtgggaatctcaaactggaggcaaaaaaaa-taaactgaaatttttaacctctacaggaagcct |
10453467 |
T |
|
| Q |
100 |
ttaatttcaaaggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaatgaatgataaataaacatcatacaaaacccataagcatc |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10453466 |
ttaatttcaaaggttcagactacaaattggtttgcataatacattgaaaaggctgcaaaaatgaatgataaataaacatcatacaaaacccataagcatc |
10453367 |
T |
|
| Q |
200 |
atgaaaaatataatagaggagataa |
224 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
10453366 |
atgaaaaatataatagaggagataa |
10453342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13401 - 13178
Alignment:
| Q |
1 |
aggatttttacagattgaaagtga-cagagaaaataatgggaatctcaaactggaggcnnnnnnnnntaaactgaaatttgtaacctctacaggaagcct |
99 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13401 |
aggatttttacagattgaaagtgaacaaagaaaatagtgggaatctcaaactggaggcaaaaaaaa-taaactgaaatttgtaacctctacaggaagcct |
13303 |
T |
|
| Q |
100 |
ttaatttcaaaggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaatgaatgataaataaacatcatacaaaacccataagcatc |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13302 |
ttaatttcaaagcttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaatgaatgataaataaacatcatacaaaacccataagcatc |
13203 |
T |
|
| Q |
200 |
atgaaaaatataatagaggagataa |
224 |
Q |
| |
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| |||||||||||||||||||||| |
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|
| T |
13202 |
gtaaaaaatataatagaggagataa |
13178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 56477847 - 56478073
Alignment:
| Q |
1 |
aggatttttacagattgaaagtga-cagagaaaataatgggaatctcaaactggaggcnnnnnnnnntaaactgaaatttgtaacctctacaggaagcct |
99 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
56477847 |
aggatttttttagattgaaagtgaacaaagaaaatagtgggaatctcaaactggaggcaaaaacaataaaactgaaatatgtaacctctacaggaagcct |
56477946 |
T |
|
| Q |
100 |
ttaa-tttcaaa-ggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaatgaatgataaataaacatcatacaaaacccataagca |
197 |
Q |
| |
|
| || ||||||| |||||||| |||||||||||||||| | || ||||||| ||||||||| ||||||||||| |||| || ||||||||||||||| |
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| T |
56477947 |
tcaaatttcaaaaggttcagactacaaattggtttgcaaagtaagttgaaaacagtgcaaaaataaatgataaatatacataatgcaaaacccataagca |
56478046 |
T |
|
| Q |
198 |
tcatgaaaaatataatagaggagataa |
224 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
56478047 |
tcatgaaaaataaaatagaggagataa |
56478073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 444965 - 445173
Alignment:
| Q |
1 |
aggatttttacagattgaaagtga-cagagaaaataatgggaatctcaaactggaggcnnnnnnnnntaaactgaaatttgtaacctctacaggaagcct |
99 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
444965 |
aggatttttttagattgaaagtgaacaaagaaaatagtgggaatctcaaactggaggcaaaaacgattaaactgaaatatgtaacctctacaggaagcct |
445064 |
T |
|
| Q |
100 |
ttaatttcaaaggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaatgaatgataaataaacatcatacaaaacccataagcatc |
199 |
Q |
| |
|
| |||| |||||||||||||||| | || ||||||| ||||||||| ||||||||||| |||| || ||||||||||||||||| |
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|
| T |
445065 |
t--------------cagactacaaattggtttgcaaagtaagttgaaaacagtgcaaaaataaatgataaatagacataatgcaaaacccataagcatc |
445150 |
T |
|
| Q |
200 |
atg-aaaaatataatagaggaga |
221 |
Q |
| |
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|| ||||||| ||||||||||| |
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|
| T |
445151 |
ctgaaaaaataaaatagaggaga |
445173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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