View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17822_low_4 (Length: 337)
Name: NF17822_low_4
Description: NF17822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17822_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 31636747 - 31636437
Alignment:
| Q |
11 |
taattctgcatttgccgttaccctcaagcttcctagaaacatcaacaaataaacnnnnnnntctcatagaaatttaaaatttccacccattgaaagtgaa |
110 |
Q |
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| T |
31636747 |
taattctgcatttgccgttaccctcaagcttcctagaaacatcaacaaataaacaaaaaaatctcatagaaatttaaaatttccacccattgaaagtgaa |
31636648 |
T |
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| Q |
111 |
acacgactaagttattattgagtataatcaactacgcgtagttt-gtttatttcagacattgatttatatcccttttagtgctattcctctttccaacta |
209 |
Q |
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| T |
31636647 |
acacgactaagttattattgaatataataaactacgcgtagttttgtttatttcagacattgatttatatcccttttagtgctattcctctttccaacta |
31636548 |
T |
|
| Q |
210 |
aacctattctaactttctttcttcggctgcaagaatgaaacctcttcttcatccatcttcttttctctttttctccgtgatacttttaatgatcttcatc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
31636547 |
aacctattctaactttctttcttcggctgcaagaatgaaacctcttcttcatccatcttcttttctctttttctccgtgatgcttttgatgatcttcatc |
31636448 |
T |
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| Q |
310 |
atcaatattcc |
320 |
Q |
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| T |
31636447 |
atcaatattcc |
31636437 |
T |
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