View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17822_low_6 (Length: 310)
Name: NF17822_low_6
Description: NF17822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17822_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 15082246 - 15082525
Alignment:
| Q |
15 |
tttgttgctatagacgaaggacaaagacttatttgagggcattaatagcttcttactagatatttggctaacagcattatttgctcgtctgtttccaaca |
114 |
Q |
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| T |
15082246 |
tttgttgctatagacgaaggacaaagacttatttgagggcattaatagctttttactagattttttgctaacagcattatttgctcgtctgtttccaaca |
15082345 |
T |
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| Q |
115 |
caatgttaatgtgaactactatactgctgttttcacaacttatttggcgttttgaggtttttattgactctgaaaacaatcttgttatgcaggtgtatcc |
214 |
Q |
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| T |
15082346 |
caatgttaatgtgaactactatactgctgttttcacatcttatttggcgttttgaggtttttattgactctgaaaacaatcttgttatgcaggtgtatcc |
15082445 |
T |
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| Q |
215 |
cgactccacactggattgaataacgcggctgttggttacaacgctccaaacctgttcttcatatatctcatggttattga |
294 |
Q |
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| T |
15082446 |
cgactccacactggattgaataaagcggctgttggttacaacgctccaaacctgttcttaatatatctcatggttattga |
15082525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 39 - 294
Target Start/End: Complemental strand, 18661610 - 18661355
Alignment:
| Q |
39 |
agacttatttgagggcattaatagcttcttactagatatttggctaacagcattatttgctcgtctgtttccaacacaatgttaatgtgaactactatac |
138 |
Q |
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| T |
18661610 |
agacttatttgagggcattaatagctttttactagattttttgctaacagcattatttgctcgtctgtttccaacacaatgttaatgtgaactactatac |
18661511 |
T |
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| Q |
139 |
tgctgttttcacaacttatttggcgttttgaggtttttattgactctgaaaacaatcttgttatgcaggtgtatcccgactccacactggattgaataac |
238 |
Q |
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| T |
18661510 |
tgctgttttcacatcttatttggcgttttgaggtttttattgactctgaaaacaatcttgttatgcaggtgtatcccgactccacactggattgaataat |
18661411 |
T |
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| Q |
239 |
gcggctgttggttacaacgctccaaacctgttcttcatatatctcatggttattga |
294 |
Q |
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| T |
18661410 |
gcggctgttggttacaacgctccaaacctgttcttcatatatctcatggttattga |
18661355 |
T |
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