View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17822_low_7 (Length: 307)
Name: NF17822_low_7
Description: NF17822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17822_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 1451591 - 1451871
Alignment:
| Q |
17 |
aagttgtgaatcagatatgatattgttgagtaaatttgactgtttctgagcagattaagctcagccttgcataaatctgaattttcttcccttttcaatg |
116 |
Q |
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| T |
1451591 |
aagttgtgaatcagatatgatattgttgagtaaatttgactgtttctgagcagattaagctcagccttgcataaatctgaattttcttcccttttcaatg |
1451690 |
T |
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| Q |
117 |
gaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaacttgggaagcttggatctttacttgaacaatttaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1451691 |
gaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaacttgggaagcttggatctttacttgaacaatttaac |
1451790 |
T |
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| Q |
217 |
cggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcattattctcatacctttg |
297 |
Q |
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| T |
1451791 |
cggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcattattctcatatctttg |
1451871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 1445415 - 1445696
Alignment:
| Q |
17 |
aagttgtgaatcagatatgatattgttgagtaaatttgactgtttctg-agcagattaagctcagccttgcataaatctgaattttcttcccttttcaat |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
1445415 |
aagttgtgaatcagatatgatattgttgagtgaatttgactgtttttttagcagattaagctcaaccttgcacaaatctgaattttcttcccttttcaat |
1445514 |
T |
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| Q |
116 |
ggaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaacttgggaagcttggatctttacttgaacaatttaa |
215 |
Q |
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| T |
1445515 |
ggaagggaactttataataataagataacaggaactatcccggaagagctaggaaatttgacaaacttggagagcttggatctttacttgaacaatataa |
1445614 |
T |
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| Q |
216 |
ccggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcattattctcatacctttg |
297 |
Q |
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||||||||||| |||||||| ||||| ||||||||||| | |||||||||||||||||||| ||||||||||| ||||| |
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| T |
1445615 |
gtggtaccataccgaatacattgggcaaccttcaaaaactccgcttcctgtatgacatactttcgttattctcatatctttg |
1445696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 83 - 285
Target Start/End: Original strand, 1439138 - 1439340
Alignment:
| Q |
83 |
ttgcataaatctgaattttcttcccttttcaatggaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaact |
182 |
Q |
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||||||||||||||| |||||||||||||||| || |||| ||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||| |
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| T |
1439138 |
ttgcataaatctgaactttcttcccttttcaacggcagggaactttttaataataatataacaggaaaaatcccagaagagctaggaaaattgacaaact |
1439237 |
T |
|
| Q |
183 |
tgggaagcttggatctttacttgaacaatttaaccggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcatt |
282 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||| |||||||| || || ||||||||||||| |||||||||||| ||||||| || |
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| T |
1439238 |
tggagagcttggatctttacttgaacaatttaagtggtaccataccgaatacattgggaaaccttcaaaaactaaaattcctgtatgacttactttcctt |
1439337 |
T |
|
| Q |
283 |
att |
285 |
Q |
| |
|
||| |
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| T |
1439338 |
att |
1439340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 89 - 297
Target Start/End: Original strand, 1426209 - 1426416
Alignment:
| Q |
89 |
aaatctgaattttcttcccttttcaatggaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaacttgggaa |
188 |
Q |
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|||| |||| ||||||||| ||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| | |
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| T |
1426209 |
aaatatgaactttcttcccctttcaatggcagggaactttatagtaataatataacaggaaaaatcccagaagagctaggaaatttgacaaacttggtga |
1426308 |
T |
|
| Q |
189 |
gcttggatctttacttgaacaatttaaccggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcattattctc |
288 |
Q |
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|||||||||||||||||||| |||||| ||||||||||| | |||||| |||||||||| ||||||| | |||||||||| ||||||||| |||||||| |
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| T |
1426309 |
gcttggatctttacttgaaccatttaagtggtaccataccgactacattgggcaagcttctaaaactacggttcctgtatg-catactttccttattctc |
1426407 |
T |
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| Q |
289 |
atacctttg |
297 |
Q |
| |
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||| ||||| |
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| T |
1426408 |
atatctttg |
1426416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 91 - 297
Target Start/End: Original strand, 1433001 - 1433207
Alignment:
| Q |
91 |
atctgaattttcttcccttttcaatggaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaacttgggaagc |
190 |
Q |
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||||||| ||||| | | ||||||||| |||| |||| || ||||||||||||||||| ||||||||||||| |||||||||| |||||||| | ||| |
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| T |
1433001 |
atctgaactttctcctcatttcaatggcagggagctttctagtaataatataacaggaaaaatcccagaagagttaggaaatttgacaaacttagtgagc |
1433100 |
T |
|
| Q |
191 |
ttggatctttacttgaacaatttaaccggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcattattctcat |
290 |
Q |
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|||||||||||||||||| |||||| ||||||||||| |||||||| ||||| ||||| |||||| |||||||||||||||| ||||| |||||||||| |
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| T |
1433101 |
ttggatctttacttgaaccatttaagcggtaccatactgaatacattgggcaaccttcacaaactatgtttcctgtatgacatgctttccttattctcat |
1433200 |
T |
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| Q |
291 |
acctttg |
297 |
Q |
| |
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| T |
1433201 |
atctttg |
1433207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 1438670 - 1438715
Alignment:
| Q |
32 |
tatgatattgttgagtaaatttgactgtttctgagcagattaagct |
77 |
Q |
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| T |
1438670 |
tatgatattgttgagtaaatttgactggttctgagtatattaagct |
1438715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 1425817 - 1425884
Alignment:
| Q |
17 |
aagttgtgaatcagatatgatattgttgagtaaatttgactgtttctgagcagattaagctcagccttg |
85 |
Q |
| |
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||||||||| ||||||||| | |||||||||| ||||||||||| ||||||||||||| ||| ||||| |
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| T |
1425817 |
aagttgtgattcagatatgttggtgttgagtaa-tttgactgtttatgagcagattaagatcaaccttg |
1425884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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