View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17822_low_8 (Length: 293)
Name: NF17822_low_8
Description: NF17822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17822_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 40805548 - 40805836
Alignment:
| Q |
9 |
aaaataaagaagaaaataacaacccagtcaaattcatataaac---------------taaattggcaaaaacaacaacaatagaggaattaaccgattt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40805548 |
aaaataaagaagaaaataacaacccagtcaaattcatataaactaaatgctctaaaactaaattggcaaaaacaacaacaatagaggaactaaccgattt |
40805647 |
T |
|
| Q |
94 |
tgatggctctttgtcgttttccatacagcctaagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40805648 |
tgatggctctttgtcgttttccatacagcctaagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatat |
40805747 |
T |
|
| Q |
194 |
cattgtataacaaaaggagattattataattgacaaattacaaataaatatggtatatatatcggaaataaaacataaaatgaattttt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40805748 |
cattgtataacaaaaggagattattataattgacagattacaaataaatatggtatatatgtcggaaataaaacataaaatgaattttt |
40805836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 9519094 - 9518947
Alignment:
| Q |
101 |
tctttgtcgttttccatacagcctaagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatatcattgta |
200 |
Q |
| |
|
|||||| || |||||||| || || ||||||||||||||| ||| || |||||| ||| ||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
9519094 |
tctttgccgatttccatattgcataggcatagtggaattatctcacttctaagaagaaaatctatgctttctttggtgttaacctgtgactatca-tgta |
9518996 |
T |
|
| Q |
201 |
taacaaaaggagattattataattgacaaattacaaataaatatggtat |
249 |
Q |
| |
|
||| ||||| |||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
9518995 |
cgacagaaggaaattattataattaacaaaggaaaaataaatatggtat |
9518947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 9519202 - 9519160
Alignment:
| Q |
9 |
aaaataaagaagaaaataacaacccagtcaaattcatataaac |
51 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9519202 |
aaaattaagaagaaaataacaaccaagtcaaattcatataaac |
9519160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 24127695 - 24127789
Alignment:
| Q |
125 |
aagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatatcattgtat-aacaaaaggagattatta |
219 |
Q |
| |
|
||||| ||||||||||| ||| || || |||| ||| || |||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
24127695 |
aagcagagtggaattatctcacttaaaataaggtaacccaagacttctttggtgttaacctgtgaatatca-agtatcaacaaaaggaaattatta |
24127789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 279
Target Start/End: Complemental strand, 16341455 - 16341301
Alignment:
| Q |
124 |
taagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatatcattgtataacaaaaggagattattataat |
223 |
Q |
| |
|
|||||||| ||||||||| || ||| |||||||||| |||||||| ||||| ||||||| | ||||||| |||| |||| ||| ||||| ||||| |
|
|
| T |
16341455 |
taagcataatggaattatctcgcttgaaagaaggaaatctatgacttccttggttttaacctttagatatcat-gtatgacaatgggaaattatcataat |
16341357 |
T |
|
| Q |
224 |
tgacaaattacaaataaatatggtatatatatcggaaataaaacataaaatgaatt |
279 |
Q |
| |
|
||| | | ||| || |||||||||||| | | ||||||||||||||| |||||| |
|
|
| T |
16341356 |
tgatatactacgaaaaaatatggtatacttgtaagaaataaaacataaagtgaatt |
16341301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 5116898 - 5116968
Alignment:
| Q |
125 |
aagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatatca |
195 |
Q |
| |
|
|||||||||| |||||| ||| ||| ||| ||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
5116898 |
aagcatagtgaaattatctcacttgagagatagaaacctatggcttctttggtgttaacctgtgaatatca |
5116968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University