View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17823_high_1 (Length: 679)
Name: NF17823_high_1
Description: NF17823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17823_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 662
Target Start/End: Original strand, 34121367 - 34122028
Alignment:
| Q |
1 |
atttcatttttcatatccagttatgccaggagagttggttggaggggtatttcttggcgcagtggttcaagaaggagcaaaaccaatcacaaaccaaata |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
34121367 |
atttcatttttcatatccagttatggcaggagagttggttggaggggcatttcttggcgcagtggttcaagaaggagcaaaaccattcacaaatcaaata |
34121466 |
T |
|
| Q |
101 |
tccaaaggttggaagtttnnnnnnnnnnnnnnnnnccttgactcactcgtggaacgaatcatgccagtagcggaagaaatgaaacaatttgatgaaaact |
200 |
Q |
| |
|
|||||||||| |||||| | ||||||| |||||||||||||||| ||||| ||| |||||||| ||| ||| ||||||||| |
|
|
| T |
34121467 |
tccaaaggtttgaagttcaaaaaaacacgaaaaatcgttgactctctcgtggaacgaatcaagccagcagcagaagaaattgaacgattaaatgaaaact |
34121566 |
T |
|
| Q |
201 |
tggatcgtccaaaggaagaaacagaaaggcaaatggaagaacttgaacaagggaaaaaggtagttaagaaacactccaaagttccttggtggaaattttg |
300 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34121567 |
tggatcgtccaaaggaagaaacaaaagtgctaatggaagaacttaaacaagggaaagaggtagttaacaaacactccaaagttccttggtggaaattttg |
34121666 |
T |
|
| Q |
301 |
ttgtctaccttgcttccaaggagaacttcaagctaaggaagagaaaattgctagaacctgtagccttgttaccccgatgaacacggcaagagatgttaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34121667 |
ttgtctaccttgcttccaaggagaacttcaagctaaggaagagaaaattgctagaacctgtagccttgttaccccgatgaacacggcaagagatgttaaa |
34121766 |
T |
|
| Q |
401 |
gaaacactttctttagtgagagatttgaaggggagacaattcaatttcaagaggttatgtgaatgtgatcctcctgtaaaacctgatttcactgttgggt |
500 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34121767 |
gagacactttctatagtgagagatttgaaggggagacaattcaatttcaagaggttatgtgaatgtgatcctcctgtaaaacctgatttcactgttgggt |
34121866 |
T |
|
| Q |
501 |
tggatgtgcctctgcatcagttgaagaattgggtgctcagtagtgatgtgtctgtagactctgtacatgtgttaactggcttggctggatccgggaaaac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34121867 |
tggatgtgcctctgcatcagttgaagaattgggtgctcagtagtgatgtgtctgtagactctgtacatgtgttaactggcttggctggatccgggaaaac |
34121966 |
T |
|
| Q |
601 |
cactttggctacgttgctatgttgcgatgacaaagttataggtaacatatataactctattt |
662 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34121967 |
cactttggctacgttgctatgttgcgatgacaaagttataggtaacatatataactctattt |
34122028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 9 - 645
Target Start/End: Original strand, 34109531 - 34110149
Alignment:
| Q |
9 |
tttcatatccagttatgccaggagagttggttggaggggtatttcttggcgcagtggttcaagaaggagcaaaaccaatcacaaaccaaatatccaaagg |
108 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
34109531 |
tttcatatccagttatggcaggagagttgattggaggggcatttcttggcgcagtggttcaagaagggatgcaaccagtcacaaaccagatatccaaagc |
34109630 |
T |
|
| Q |
109 |
ttggaagtttnnnnnnnnnnnnnnnnnccttgactcactcgtggaacgaatcatgccagtagcggaagaaatgaaacaatttgatgaaaacttggatcgt |
208 |
Q |
| |
|
|| | ||| ||| ||||| || ||||| || |||| ||||||||| |||||||||| || ||| | || || ||||||| | |
|
|
| T |
34109631 |
tttcatgttcaaaacctcacgcaaaaacctcgactctctggtggatcggatcacgccagtagctgaagaaatgagactattaaacgagaaattggatcat |
34109730 |
T |
|
| Q |
209 |
ccaaaggaagaaacagaaaggcaaatggaagaacttgaacaagggaaaaaggtagttaagaaacactccaaagttccttggtggaaattttgttgtctac |
308 |
Q |
| |
|
|| | |||||||||||| | | ||| |||||||| |||||||||| | | ||| || |||||||||||||| || |||||||||| ||||||| ||| |
|
|
| T |
34109731 |
ccgatggaagaaacagagatgttaatagaagaactgatacaagggaaagatgcagtaaacaaacactccaaagtcccatggtggaaatgttgttgtttac |
34109830 |
T |
|
| Q |
309 |
cttgcttccaaggagaacttcaagctaaggaagagaaaattgctagaacctgtagccttgttaccccgatgaacacggcaagagatgttaaagaaacact |
408 |
Q |
| |
|
|||| ||||||||||| || | | || |||||||||||||||||| || | || |||||||| ||||||||||||||||| ||||||||| | | | |
|
|
| T |
34109831 |
cttgtttccaaggagagatttatgatagagaagagaaaattgctagatccagcagtcttgttactccgatgaacacggcaagggatgttaaaaaggtatt |
34109930 |
T |
|
| Q |
409 |
ttctttagtgagagatttgaagg-ggagacaattcaatttcaagaggttatgtgaatgtgatcctcctgtaaaacctgatttcactgttgggttggatgt |
507 |
Q |
| |
|
||| || ||| |||| | ||| || || || ||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||| | |
|
|
| T |
34109931 |
gtctatattgaaagataggcaggagggga----ggaaattcaagaggtt------atgtgatgctcctgtaaaacctgatctcactgttggattggattt |
34110020 |
T |
|
| Q |
508 |
gcctctgcatcagttgaagaattgggtgctcagtagtgatgtgtctgtagactctgtacatgtgttaactggcttggctggatccgggaaaaccactttg |
607 |
Q |
| |
|
||| || ||||||||||| |||| | ||| | |||| |||| ||||||| ||| ||||| || ||||||||||| || ||||| |||||| |
|
|
| T |
34110021 |
tcctttgattcagttgaagagttggttactcggcagtggtgtg---------tctgtacttgttttaaccggtttggctggatctggcaaaactactttg |
34110111 |
T |
|
| Q |
608 |
gctacgttgctatgttgcgatgacaaagttataggtaa |
645 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
34110112 |
gctacgttgctctgttgggatgacaaagttagaggtaa |
34110149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University