View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17823_low_3 (Length: 509)
Name: NF17823_low_3
Description: NF17823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17823_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 493
Target Start/End: Complemental strand, 47918716 - 47918243
Alignment:
| Q |
10 |
aagaatataacaagtctggaacaaaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaac |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918716 |
aagaatataacaagtctggaacaaaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaat |
47918617 |
T |
|
| Q |
110 |
gtg-agaaaatggaaagnnnnnnntataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaa |
208 |
Q |
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| T |
47918616 |
atacataaaa---aaa--------tataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaa |
47918528 |
T |
|
| Q |
209 |
agcttaattagtacctgaattatgccggaatggtcaccctttgagtgcttttcgaacctttataggctcaacaggttcatctcccctattttgtctctga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918527 |
agcttaattagtacctgaattatgccggaatggtcaccctttgagtgcttttcgaacctttataggctcaacaggttcatctcccctattttgtctctga |
47918428 |
T |
|
| Q |
309 |
ttcatggtcttgttttcctcacttgcgtgaaaagcatctgacctgcgacggatagagtcgggaaaaccattgattttgaccttaaactcatcatactcgc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47918427 |
ttcatggtcttgttttcctcacttgcgtgaaaagcatctgacctgcgatggatagagtcgggaaaaccattgattttgaccttaaactcatcatactcac |
47918328 |
T |
|
| Q |
409 |
gcttcagccttctacaatccttcacaaaatctggtttcactttgtttttgtaaggatcaccctttaagttgaagtatgattcagg |
493 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918327 |
gcttcagccttctacgatccttcacaaaatctagtttcactttgtttttgtaaggatcaccctttaagttgaagtatgattcagg |
47918243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 6932583 - 6932520
Alignment:
| Q |
10 |
aagaatataacaagtctggaacaaaagaatacaccggcaataa---aaaagagtttatacataa |
70 |
Q |
| |
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||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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| T |
6932583 |
aagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaagagtttatacataa |
6932520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 254 - 493
Target Start/End: Original strand, 29918750 - 29918992
Alignment:
| Q |
254 |
tgcttttcgaacctttataggctcaacaggttcatctcccctattttgtctctgat---tcatggtcttgttttcctcacttgcgtgaaaagcatctgac |
350 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||| ||||||| ||||| ||||||||||||||| |
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| T |
29918750 |
tgctttttgaacctttataggctcaacaggttcatcacccctattttgtctctgatgtttcatggccttgatttcctctcttgcatgaaaagcatctgac |
29918849 |
T |
|
| Q |
351 |
ctgcgacggatagagtcgggaaaaccattgattttgaccttaaactcatcatactcgcgcttcagccttctacaatccttcacaaaatctggtttcactt |
450 |
Q |
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|||||||||||||||||||| |||||||||||| | ||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
29918850 |
ctgcgacggatagagtcgggcaaaccattgattctaaccttgaactcatcatactcacgcttcagccttctacgatccttcacaaaatcaggtttcactt |
29918949 |
T |
|
| Q |
451 |
tgtttttgtaaggatcaccctttaagttgaagtatgattcagg |
493 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||| |
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| T |
29918950 |
tgtttttgtaaggatctctctttaagttgaagtatgattcagg |
29918992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 29918456 - 29918694
Alignment:
| Q |
16 |
ataacaagtctggaacaaaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaacgtgaga |
115 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||| ||||| |||||| |
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| T |
29918456 |
ataacaagtctggaacaaaagaatacatcggcaataaaa--gagtttatacataaaaagtctt-cacttcacatagaattggacataaataggtgtgaga |
29918552 |
T |
|
| Q |
116 |
aaatggaaagnnnnnnntataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagct--- |
212 |
Q |
| |
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||||||||| | |||||||||||||||||||||| |||| |||| | ||||||||||| |||||||| |||||||||||||||||| | |
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| T |
29918553 |
aaatggaaa---ataatttgaatcttgatttatattactaattctctaactgaatttttttataatttcatagatcacagcagcaatttcaaaagtttag |
29918649 |
T |
|
| Q |
213 |
taattagtacctgaattatgccggaatggtcaccctttgagtgct |
257 |
Q |
| |
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|| ||||||||||||||||||| | |||||||||| ||||||||| |
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| T |
29918650 |
tacttagtacctgaattatgccagcatggtcaccccttgagtgct |
29918694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 508645 - 508582
Alignment:
| Q |
10 |
aagaatataacaagtctggaacaaaagaatacaccggcaataa---aaaagagtttatacataa |
70 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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|
| T |
508645 |
aagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaagagtttatacataa |
508582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 26291256 - 26291192
Alignment:
| Q |
10 |
aagaatataacaagtctggaacaaaagaatacaccggcaataa----aaaagagtttatacataa |
70 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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|
| T |
26291256 |
aagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaaagagtttatacataa |
26291192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 14610199 - 14610146
Alignment:
| Q |
387 |
accttaaactcatcatactcgcgcttcagccttctacaatccttcacaaaatct |
440 |
Q |
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||||| |||||||||||||| | ||||| |||||| | |||||||||||||||| |
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| T |
14610199 |
accttgaactcatcatactccctcttcacccttcttctatccttcacaaaatct |
14610146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 18290966 - 18290906
Alignment:
| Q |
10 |
aagaatataacaagtctggaacaaaagaatacaccggcaa-taaaaaagagtttatacata |
69 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | || || |||||| ||||||||||||| |
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|
| T |
18290966 |
aagaatataacaagtttggaacaaaagaatatattgggaattaaaaaggagtttatacata |
18290906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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