View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17824_high_12 (Length: 289)

Name: NF17824_high_12
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17824_high_12
NF17824_high_12
[»] chr3 (18 HSPs)
chr3 (16-281)||(1324577-1324843)
chr3 (45-105)||(43908796-43908856)
chr3 (42-110)||(51889870-51889938)
chr3 (31-105)||(36080718-36080792)
chr3 (48-109)||(3941737-3941798)
chr3 (28-107)||(12832138-12832217)
chr3 (58-105)||(14984602-14984649)
chr3 (42-109)||(26499912-26499978)
chr3 (47-105)||(621789-621847)
chr3 (67-109)||(21568461-21568503)
chr3 (17-110)||(23567161-23567253)
chr3 (28-105)||(30843734-30843811)
chr3 (171-228)||(47944322-47944379)
chr3 (42-110)||(39336630-39336698)
chr3 (181-217)||(43838843-43838879)
chr3 (171-215)||(47944559-47944603)
chr3 (16-109)||(1183039-1183131)
chr3 (65-109)||(40954422-40954466)
[»] chr6 (14 HSPs)
chr6 (42-110)||(28747880-28747948)
chr6 (28-123)||(10219711-10219805)
chr6 (184-242)||(3712299-3712357)
chr6 (17-110)||(33806738-33806831)
chr6 (46-109)||(10067571-10067634)
chr6 (171-218)||(33806699-33806746)
chr6 (28-109)||(18130031-18130110)
chr6 (28-105)||(18354686-18354763)
chr6 (63-107)||(27789122-27789166)
chr6 (176-215)||(22260415-22260454)
chr6 (44-110)||(33550933-33550999)
chr6 (172-217)||(32545372-32545417)
chr6 (179-215)||(10067739-10067775)
chr6 (47-123)||(31142095-31142170)
[»] chr1 (12 HSPs)
chr1 (48-109)||(45679623-45679684)
chr1 (64-106)||(45392452-45392494)
chr1 (69-109)||(38267285-38267325)
chr1 (65-109)||(51273311-51273355)
chr1 (42-105)||(30050413-30050476)
chr1 (175-218)||(38445183-38445226)
chr1 (185-219)||(8241762-8241796)
chr1 (47-101)||(19464333-19464387)
chr1 (65-110)||(33747797-33747842)
chr1 (64-109)||(34826931-34826976)
chr1 (181-225)||(12238601-12238645)
chr1 (42-102)||(26515269-26515329)
[»] chr5 (12 HSPs)
chr5 (42-110)||(23159184-23159252)
chr5 (42-108)||(42420456-42420522)
chr5 (187-219)||(9577102-9577134)
chr5 (65-105)||(27001312-27001352)
chr5 (47-86)||(16750238-16750277)
chr5 (194-240)||(296564-296610)
chr5 (173-211)||(3709590-3709628)
chr5 (175-221)||(42932831-42932877)
chr5 (182-215)||(917179-917212)
chr5 (177-226)||(28561448-28561497)
chr5 (28-109)||(29686525-29686606)
chr5 (182-214)||(9572719-9572751)
[»] chr4 (24 HSPs)
chr4 (58-109)||(31903411-31903462)
chr4 (28-105)||(29223343-29223420)
chr4 (63-109)||(4161755-4161801)
chr4 (62-108)||(24806601-24806647)
chr4 (47-109)||(48973255-48973317)
chr4 (68-109)||(40836823-40836864)
chr4 (42-110)||(50384461-50384529)
chr4 (42-109)||(51234342-51234409)
chr4 (181-242)||(37687119-37687181)
chr4 (63-106)||(11839963-11840006)
chr4 (58-109)||(39331035-39331086)
chr4 (172-219)||(39331176-39331223)
chr4 (178-217)||(40836914-40836953)
chr4 (63-109)||(14810368-14810414)
chr4 (63-109)||(29116253-29116299)
chr4 (181-215)||(40407657-40407691)
chr4 (47-109)||(55132463-55132525)
chr4 (173-218)||(10462810-10462855)
chr4 (16-105)||(17381371-17381460)
chr4 (181-218)||(25855286-25855323)
chr4 (70-106)||(8170840-8170876)
chr4 (171-215)||(32123827-32123871)
chr4 (171-215)||(46217218-46217262)
chr4 (16-108)||(46804842-46804934)
[»] chr2 (11 HSPs)
chr2 (63-105)||(13242611-13242653)
chr2 (181-242)||(1517565-1517626)
chr2 (65-109)||(19206372-19206416)
chr2 (180-219)||(1090190-1090229)
chr2 (48-99)||(15301440-15301491)
chr2 (171-225)||(12676423-12676477)
chr2 (63-109)||(21603603-21603649)
chr2 (170-212)||(41546352-41546394)
chr2 (184-213)||(18636454-18636483)
chr2 (174-219)||(28779728-28779773)
chr2 (171-235)||(9471803-9471867)
[»] chr8 (13 HSPs)
chr8 (69-110)||(21602047-21602088)
chr8 (47-106)||(4493141-4493200)
chr8 (171-217)||(21600452-21600498)
chr8 (28-105)||(2988282-2988359)
chr8 (64-109)||(42659995-42660040)
chr8 (171-215)||(21215950-21215994)
chr8 (192-225)||(8491346-8491379)
chr8 (170-215)||(23665048-23665093)
chr8 (181-222)||(29908943-29908984)
chr8 (175-215)||(3718247-3718287)
chr8 (184-224)||(13910529-13910569)
chr8 (65-105)||(34949041-34949081)
chr8 (77-109)||(44362505-44362537)
[»] chr7 (12 HSPs)
chr7 (64-105)||(12849620-12849661)
chr7 (171-215)||(23441505-23441549)
chr7 (15-105)||(3116991-3117080)
chr7 (63-109)||(39129160-39129206)
chr7 (171-212)||(23532900-23532941)
chr7 (64-105)||(49078087-49078128)
chr7 (171-215)||(23457825-23457869)
chr7 (171-215)||(23474559-23474603)
chr7 (65-105)||(32996432-32996472)
chr7 (192-225)||(1052422-1052455)
chr7 (171-215)||(10228752-10228796)
chr7 (171-215)||(39608367-39608411)
[»] scaffold0102 (1 HSPs)
scaffold0102 (171-225)||(27085-27139)
[»] scaffold0005 (1 HSPs)
scaffold0005 (63-109)||(29314-29360)
[»] scaffold0003 (1 HSPs)
scaffold0003 (176-214)||(109286-109324)
[»] scaffold0002 (1 HSPs)
scaffold0002 (63-109)||(349064-349110)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 1324577 - 1324843
Alignment:
Q  16 cactttgataggcaaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaaaatact 115  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1324577 cactttgataggcaaaatagtcaccggcgcaaaaataatttttcaatactcacaataactcttttcatataaggactgaaatgacaataagtaaaatact 1324676  T
Q  116 tattaagagttcaaattggtatattgaataaataaaatgacaatattaatgaatataacgaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||||  |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  1324677 tattaggagttcaaattagtatattgaataaataacatgacaatattaactaatatagcgaagtacacaatcaatgattattttaaaatttcgatacatt 1324776  T
Q  216 aaaaaattatcataactattcgttacaaaat-agagactaaaatgattgttattcaaaataaaatag 281  Q
    ||||||||||||||||||||||||||| ||| ||  |  ||||||||| ||||||||||||||||||    
T  1324777 aaaaaattatcataactattcgttacataatcaggaatcaaaatgattattattcaaaataaaatag 1324843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 43908856 - 43908796
Alignment:
Q  45 caaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||||||||||| ||||  ||||||||||||||||||||||||| | ||||||||||||||    
T  43908856 caaaaataatttctcaatgctcacaataactcttttcatataagtattgaaatgacaataa 43908796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 51889870 - 51889938
Alignment:
Q  42 acgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaaa 110  Q
    |||| |||||||| | |||| |||||||||||||||||||||||| |||||||||| |||||| |||||    
T  51889870 acgctaaaataatctctcaatactcacaataactcttttcatatagggactgaaataacaataggtaaa 51889938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 36080792 - 36080718
Alignment:
Q  31 aatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    ||||||| |||| || |||||||| ||| ||  ||||||||||||||||||||||| ||||| ||||||||||||    
T  36080792 aatagtccccaaagctaaaataatctttgaaggctcacaataactcttttcatatatggactaaaatgacaataa 36080718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 3941798 - 3941737
Alignment:
Q  48 aaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||| | |||||||||||||||||||||||||||||| |||| | |||| |||||||||    
T  3941798 aaataatctctcaacactcacaataactcttttcatataaagactaacatgataataagtaa 3941737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 12832138 - 12832217
Alignment:
Q  28 caaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagt 107  Q
    |||||||||| |  |||| |||||||| | |||| ||| |||||||||||||| ||||||||||||| |||| |||||||    
T  12832138 caaaatagtctcttacgctaaaataatctctcaatactaacaataactctttttatataaggactgacatgaaaataagt 12832217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 14984649 - 14984602
Alignment:
Q  58 tcaacactcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||    
T  14984649 tcaatactcacaataactcttttcatatagggactggaatgacaataa 14984602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 26499978 - 26499912
Alignment:
Q  42 acgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||| |||||||||| |||| |||||| ||||||||||| ||||| |||||||||||| |||||||||    
T  26499978 acgctaaaataatttctcaatactcaccataactctttt-atatagggactgaaatgataataagtaa 26499912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 621847 - 621789
Alignment:
Q  47 aaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||||||| | |||| ||||||||||||| |||||||||| |||||||||| |||||||    
T  621847 aaaataatatctcaatactcacaataacttttttcatatatggactgaaattacaataa 621789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 21568503 - 21568461
Alignment:
Q  67 acaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||||||||||||||||||||||| |||||| |||||||||    
T  21568503 acaataactcttttcatataaggactaaaatgataataagtaa 21568461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 23567161 - 23567253
Alignment:
Q  17 actttgataggcaaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaaa 110  Q
    |||||| ||| |||||||||  | ||||| |||||||| | |||| ||| |||||| || |||| ||||||| |||||||||||||||||||||    
T  23567161 actttgttagtcaaaatagtatctaacgctaaaataatatctcaatacttacaatatctttttttatataag-actgaaatgacaataagtaaa 23567253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 30843811 - 30843734
Alignment:
Q  28 caaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||||||||| |  |||| |||||||| | ||||  |||||||||| | |||||||||||||||| ||||||||||||    
T  30843811 caaaatagtccctgacgctaaaataatctctcaatgctcacaataagttttttcatataaggactaaaatgacaataa 30843734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 47944379 - 47944322
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacattaaaaaattatcat 228  Q
    |||| |||| ||||||||| ||||||||||||||||||||||||| | | ||||||||    
T  47944379 taacaaagtgcacaatcaaagactattttaaaatttcgatacattcagagattatcat 47944322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 39336630 - 39336698
Alignment:
Q  42 acgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaaa 110  Q
    |||| |||||||| ||||||   |||||||||||| ||||||||||||| ||||| |||||||| ||||    
T  39336630 acgctaaaataatctttcaatgttcacaataactcctttcatataaggattgaaaagacaataaataaa 39336698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 43838843 - 43838879
Alignment:
Q  181 cacaatcaatgactattttaaaatttcgatacattaa 217  Q
    |||||||||||||||||||||||||| ||||||||||    
T  43838843 cacaatcaatgactattttaaaattttgatacattaa 43838879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 47944559 - 47944603
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||    
T  47944559 taacgaagtgcacaatcaaagactattttaaaatttcaatacatt 47944603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 1183039 - 1183131
Alignment:
Q  16 cactttgataggcaaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||| ||| |||||||||| |  | || |||||| | | |||||||||||||||||  ||||||||| ||| || ||||||||||||||||    
T  1183039 cactttgttagtcaaaatagtctctgatgctaaaatactatctcaacactcacaataacatttttcatat-agggcttaaatgacaataagtaa 1183131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 40954422 - 40954466
Alignment:
Q  65 tcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||| |||||||||||||||| || | ||||||||||||||||    
T  40954422 tcacaacaactcttttcatataaagattaaaatgacaataagtaa 40954466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 28747880 - 28747948
Alignment:
Q  42 acgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaaa 110  Q
    |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  28747880 acgcaaaaataatttttcaatactcacaataactctttttatatagggactgaaatgacaagaagtaaa 28747948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 10219805 - 10219711
Alignment:
Q  28 caaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaaaatacttattaaga 123  Q
    ||||||||||  | |||| ||||||||  ||||| |||||||||||||||||||||||| | |||| ||||||||||||| |||||||||| ||||    
T  10219805 caaaatagtcttcgacgctaaaataatccttcaatactcacaataactcttttcatatatgcactgcaatgacaataagt-aaatacttataaaga 10219711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 3712299 - 3712357
Alignment:
Q  184 aatcaatgactattttaaaatttcgatacattaaaaaattatcataactattcgttaca 242  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||||    
T  3712299 aatcaatgactattttagaatttcaatacattcaaaaattattataactattcgttaca 3712357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 33806738 - 33806831
Alignment:
Q  17 actttgataggcaaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaaa 110  Q
    |||||| ||| |||||||||| | ||||  |||||| |  ||||| ||||||||||||| |||||||||||| || ||| ||||||||||||||    
T  33806738 actttgttagtcaaaatagtctctaacgttaaaatattccttcaatactcacaataacttttttcatataagaaccgaattgacaataagtaaa 33806831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 10067571 - 10067634
Alignment:
Q  46 aaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||||| | |||| | || ||||||||||||||||||||| |||||||||||||| |||||    
T  10067571 aaaaataatctctcaatattcgcaataactcttttcatataagaactgaaatgacaattagtaa 10067634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 33806746 - 33806699
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacattaaa 218  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  33806746 taacaaagtacataatcaatgactattttagaatttcgatacattaaa 33806699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 18130110 - 18130031
Alignment:
Q  28 caaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||||||| |  |||| |||||||||  |||| ||||||||||||||||  |||||||| || |||||||||||||||||    
T  18130110 caaaatagtctcggacgctaaaataattcctcaatactcacaataactctt--catataagaacggaaatgacaataagtaa 18130031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 18354763 - 18354686
Alignment:
Q  28 caaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||||||||||   |||| |||||||| |||||| ||||||||||| |||||| ||||| | |||||||||| |||||    
T  18354763 caaaatagtcattgacgctaaaataatctttcaatactcacaataattctttttatatatgaactgaaatgaaaataa 18354686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 27789166 - 27789122
Alignment:
Q  63 actcacaataactcttttcatataaggactgaaatgacaataagt 107  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||    
T  27789166 actcacaataactcttttgatatagggactgaaatgataataagt 27789122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 22260454 - 22260415
Alignment:
Q  176 aagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  22260454 aagtgcacaatcaatgactattttaaaattttgatacatt 22260415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 33550933 - 33550999
Alignment:
Q  44 gcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaaa 110  Q
    |||||| |||| | |||| |||||||||||||||||| |||||  ||||||||||| |||| |||||    
T  33550933 gcaaaagtaatctctcaatactcacaataactctttttatatagagactgaaatgataatatgtaaa 33550999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 32545372 - 32545417
Alignment:
Q  172 aacgaagtacacaatcaatgactattttaaaatttcgatacattaa 217  Q
    ||||||||||||||||||||| ||||||  |||||| |||||||||    
T  32545372 aacgaagtacacaatcaatgattattttgtaatttcaatacattaa 32545417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 10067739 - 10067775
Alignment:
Q  179 tacacaatcaatgactattttaaaatttcgatacatt 215  Q
    ||||||||||  |||||||||||||||||||||||||    
T  10067739 tacacaatcagagactattttaaaatttcgatacatt 10067775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 31142170 - 31142095
Alignment:
Q  47 aaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaaaatacttattaaga 123  Q
    |||||||| |||||| || ||| |||| |||||||||||| ||| ||||||| ||||||  ||| ||||||||||||    
T  31142170 aaaataatctttcaatacccaccataagtcttttcatatatggattgaaatgtcaataa-aaaagtacttattaaga 31142095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 45679623 - 45679684
Alignment:
Q  48 aaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  45679623 aaataatatctcaatactcacaataactcttttcatataaggactaaaatgacaataagtaa 45679684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 45392494 - 45392452
Alignment:
Q  64 ctcacaataactcttttcatataaggactgaaatgacaataag 106  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  45392494 ctcacaataactcttttcatataagaactaaaatgacaataag 45392452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 38267285 - 38267325
Alignment:
Q  69 aataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  38267285 aataactcttttcatataatgactaaaatgacaataagtaa 38267325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 51273311 - 51273355
Alignment:
Q  65 tcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||||||| |||||||||||| ||| ||||||||||||||||    
T  51273311 tcacaataactattttcatataagaactaaaatgacaataagtaa 51273355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 30050413 - 30050476
Alignment:
Q  42 acgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||| ||||||||  ||||| | ||||||||||||||||||||||  |||| ||||||||||||    
T  30050413 acgctaaaataatacttcaatagtcacaataactcttttcatatatagactaaaatgacaataa 30050476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 38445183 - 38445226
Alignment:
Q  175 gaagtacacaatcaatgactattttaaaatttcgatacattaaa 218  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||    
T  38445183 gaagtgcacaatcaaagactattttagaatttcgatacattaaa 38445226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 8241796 - 8241762
Alignment:
Q  185 atcaatgactattttaaaatttcgatacattaaaa 219  Q
    ||||||||||||||||||||||| |||||||||||    
T  8241796 atcaatgactattttaaaatttcaatacattaaaa 8241762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 19464333 - 19464387
Alignment:
Q  47 aaaataatttttcaacactcacaataactcttttcatataaggactgaaatgaca 101  Q
    |||||||| | ||||  ||||| ||||||||||||||||| ||||||||||||||    
T  19464333 aaaataatatctcaatgctcacgataactcttttcatatagggactgaaatgaca 19464387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 33747797 - 33747842
Alignment:
Q  65 tcacaataactcttttcatataaggactgaaatgacaataagtaaa 110  Q
    ||||||||| ||||||||||||  ||||||||||| ||||||||||    
T  33747797 tcacaataaatcttttcatatagcgactgaaatgataataagtaaa 33747842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 34826931 - 34826976
Alignment:
Q  64 ctcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||||||||| |||||||||| | || |||||||||||||||||    
T  34826931 ctcacaataacttttttcatataggaaccgaaatgacaataagtaa 34826976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 12238601 - 12238645
Alignment:
Q  181 cacaatcaatgactattttaaaatttcgatacattaaaaaattat 225  Q
    ||||||||||||||||||||||||||| |||| || || ||||||    
T  12238601 cacaatcaatgactattttaaaatttcaatacgttgaagaattat 12238645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 26515329 - 26515269
Alignment:
Q  42 acgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaa 102  Q
    |||| |||||||| | ||||  || |||||||||||||||||||| | |||||||||||||    
T  26515329 acgctaaaataatctctcaatcctgacaataactcttttcatatatgaactgaaatgacaa 26515269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 23159252 - 23159184
Alignment:
Q  42 acgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaaa 110  Q
    |||| |||||||||||||||  ||||||||||||||||||| |||  ||||||||||||||||||||||    
T  23159252 acgctaaaataatttttcaatgctcacaataactcttttcacatagagactgaaatgacaataagtaaa 23159184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 42420522 - 42420456
Alignment:
Q  42 acgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagta 108  Q
    |||| |||||||||  |||| | ||||||||||||||||||||  ||||||||||||| ||||||||    
T  42420522 acgctaaaataattcatcaatagtcacaataactcttttcataataggactgaaatgaaaataagta 42420456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 9577134 - 9577102
Alignment:
Q  187 caatgactattttaaaatttcgatacattaaaa 219  Q
    |||||||||||||||||||||||||||||||||    
T  9577134 caatgactattttaaaatttcgatacattaaaa 9577102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 27001352 - 27001312
Alignment:
Q  65 tcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  27001352 tcacaataactcttttcatataaggattaaaatgacaataa 27001312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 16750277 - 16750238
Alignment:
Q  47 aaaataatttttcaacactcacaataactcttttcatata 86  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  16750277 aaaataatttttcaatactcacaataactctttgcatata 16750238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 296564 - 296610
Alignment:
Q  194 tattttaaaatttcgatacattaaaaaattatcataactattcgtta 240  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||    
T  296564 tattttaaaatttcaatgcattaaaagattattataactattcgtta 296610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 3709590 - 3709628
Alignment:
Q  173 acgaagtacacaatcaatgactattttaaaatttcgata 211  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  3709590 acgaagtacataatcaatgactattttaaaattttgata 3709628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 42932877 - 42932831
Alignment:
Q  175 gaagtacacaatcaatgactattttaaaatttcgatacattaaaaaa 221  Q
    |||||||||||| |   ||||||||||||||||||||||||||||||    
T  42932877 gaagtacacaatgagaaactattttaaaatttcgatacattaaaaaa 42932831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 917179 - 917212
Alignment:
Q  182 acaatcaatgactattttaaaatttcgatacatt 215  Q
    |||||||| |||||||||||||||||||||||||    
T  917179 acaatcaaagactattttaaaatttcgatacatt 917212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 28561448 - 28561497
Alignment:
Q  177 agtacacaatcaatgactattttaaaatttcgatacattaaaaaattatc 226  Q
    |||||||||||||  | ||||||||||||  |||||||||||||||||||    
T  28561448 agtacacaatcaaaaattattttaaaattctgatacattaaaaaattatc 28561497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 29686525 - 29686606
Alignment:
Q  28 caaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||||||| |  |||| |||||||| ||||||  | |||||||||| |||||||| |||||   ||||||||||||||||    
T  29686525 caaaatagtctctgacgctaaaataatatttcaatgcgcacaataacttttttcatacaaggaaaaaaatgacaataagtaa 29686606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 9572719 - 9572751
Alignment:
Q  182 acaatcaatgactattttaaaatttcgatacat 214  Q
    ||||| |||||||||||||||||||||||||||    
T  9572719 acaataaatgactattttaaaatttcgatacat 9572751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 31903462 - 31903411
Alignment:
Q  58 tcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  31903462 tcaatactcacaataactcttttcatatagggactgaaatgacaataagtaa 31903411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 29223420 - 29223343
Alignment:
Q  28 caaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||||||||| | ||||| |||||||| ||||||   |||||||||||||||||||||||||||| |||||| |||||    
T  29223420 caaaatagtctctaacgctaaaataatctttcaatgttcacaataactcttttcatataaggactaaaatgataataa 29223343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 4161755 - 4161801
Alignment:
Q  63 actcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  4161755 actcacaataacttttttcatataaggactgaaatgccaataagtaa 4161801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 24806601 - 24806647
Alignment:
Q  62 cactcacaataactcttttcatataaggactgaaatgacaataagta 108  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  24806601 cactcacattaactcttttcatataaagactgaaatgacaataagta 24806647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 48973255 - 48973317
Alignment:
Q  47 aaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||||| | |||| ||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  48973255 aaaataatatctcaatactcacaataactctttgcatataaggactaaaatgccaataagtaa 48973317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 40836864 - 40836823
Alignment:
Q  68 caataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  40836864 caataactcttttcatatagggactgaaatgacaataagtaa 40836823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 50384461 - 50384529
Alignment:
Q  42 acgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaaa 110  Q
    |||| |||||||| ||||||  ||||||||||||||||| |||||  ||||||||||||||||| ||||    
T  50384461 acgctaaaataatctttcaatgctcacaataactctttttatatagagactgaaatgacaataaataaa 50384529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 51234342 - 51234409
Alignment:
Q  42 acgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||| |||||||| | |||| |||| ||||||||||||| |||||  |||||||||||||||||||||    
T  51234342 acgctaaaataatatctcaatactcgcaataactctttttatatagtgactgaaatgacaataagtaa 51234409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 37687181 - 37687119
Alignment:
Q  181 cacaatcaatgactattttaaaatttcgatacattaaaa-aattatcataactattcgttaca 242  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||| || ||||||| |||||    
T  37687181 cacaatcaatgactattttaaatttttgatacattaaaagaattattatgactattcattaca 37687119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 11840006 - 11839963
Alignment:
Q  63 actcacaataactcttttcatataaggactgaaatgacaataag 106  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||    
T  11840006 actcacaataattctttttatatagggactgaaatgacaataag 11839963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 39331035 - 39331086
Alignment:
Q  58 tcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||| ||||||||||| ||||||||| || ||| ||||||||||||||||||    
T  39331035 tcaatactcacaataattcttttcatgtagggattgaaatgacaataagtaa 39331086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 39331176 - 39331223
Alignment:
Q  172 aacgaagtacacaatcaatgactattttaaaatttcgatacattaaaa 219  Q
    |||||||| |||||||||  |||||||||||||||| |||||||||||    
T  39331176 aacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaa 39331223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 40836914 - 40836953
Alignment:
Q  178 gtacacaatcaatgactattttaaaatttcgatacattaa 217  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  40836914 gtacacaatcaatgactattttaaaattttaatacattaa 40836953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 14810414 - 14810368
Alignment:
Q  63 actcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||||||||| |||| |||||| |||| ||||||||||||||||    
T  14810414 actcacaataactattttgatataaagactaaaatgacaataagtaa 14810368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 29116253 - 29116299
Alignment:
Q  63 actcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||||||||||||||| ||||| | |||||||||||| |||||||    
T  29116253 actcacaataactcttttgatataggtactgaaatgacagtaagtaa 29116299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 40407657 - 40407691
Alignment:
Q  181 cacaatcaatgactattttaaaatttcgatacatt 215  Q
    |||||||||||||||||||||||||| ||||||||    
T  40407657 cacaatcaatgactattttaaaattttgatacatt 40407691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 55132525 - 55132463
Alignment:
Q  47 aaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||||| | |||| ||||| ||||| |||||||||| |||||||||||| | |||||||||    
T  55132525 aaaataatctctcaatactcataataattcttttcatacaaggactgaaatcaaaataagtaa 55132463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 10462810 - 10462855
Alignment:
Q  173 acgaagtacacaatcaatgactattttaaaatttcgatacattaaa 218  Q
    ||||||||||||||||  |||||||||| ||||| |||||||||||    
T  10462810 acgaagtacacaatcatggactattttacaattttgatacattaaa 10462855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 17381371 - 17381460
Alignment:
Q  16 cactttgataggcaaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    ||||||| ||| |||||||||| | |||||  ||||||||  | || |||||||||||||||||| |||||   ||| ||||||||||||    
T  17381371 cactttgttagtcaaaatagtctctaacgcttaaataattccttaatactcacaataactcttttgatatagaaactaaaatgacaataa 17381460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 25855286 - 25855323
Alignment:
Q  181 cacaatcaatgactattttaaaatttcgatacattaaa 218  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  25855286 cacaatcaaagactattttaaaatttcaatacattaaa 25855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 8170840 - 8170876
Alignment:
Q  70 ataactcttttcatataaggactgaaatgacaataag 106  Q
    ||||||||||||||||||||| | |||||||||||||    
T  8170840 ataactcttttcatataaggattaaaatgacaataag 8170876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 32123871 - 32123827
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    |||||||||||| |||||| ||||||||||||||||  |||||||    
T  32123871 taacgaagtacaaaatcaaagactattttaaaattttaatacatt 32123827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 46217218 - 46217262
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    ||||||| |||||||||||||||||||||| ||||| ||| ||||    
T  46217218 taacgaaatacacaatcaatgactattttataattttgatgcatt 46217262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 46804842 - 46804934
Alignment:
Q  16 cactttgataggcaaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataagta 108  Q
    ||||||| ||| |||||||||| |  || |||||||||| | |||| | ||||||||||||||| ||||||| |  | ||||||||| |||||    
T  46804842 cactttgttagtcaaaatagtctctgacacaaaaataatctctcaatagtcacaataactctttccatataatggttaaaatgacaacaagta 46804934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 13242653 - 13242611
Alignment:
Q  63 actcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  13242653 actcacaataactcttttcatataatgactgaaatgacaataa 13242611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 1517626 - 1517565
Alignment:
Q  181 cacaatcaatgactattttaaaatttcgatacattaaaaaattatcataactattcgttaca 242  Q
    ||||||||| ||||||||||||||||||||||||| ||  | |||| |||||||||||||||    
T  1517626 cacaatcaaagactattttaaaatttcgatacattgaaggactatcgtaactattcgttaca 1517565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 19206372 - 19206416
Alignment:
Q  65 tcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||    
T  19206372 tcacaataactcttttcatatagagactgaaatgacaatatgtaa 19206416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 1090229 - 1090190
Alignment:
Q  180 acacaatcaatgactattttaaaatttcgatacattaaaa 219  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  1090229 acacaatcaatgactattttaaaattttgatacatcaaaa 1090190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 15301440 - 15301491
Alignment:
Q  48 aaataatttttcaacactcacaataactcttttcatataaggactgaaatga 99  Q
    ||||||| | |||| ||||||||||||| |||||||||| ||||||||||||    
T  15301440 aaataatctctcaatactcacaataacttttttcatatagggactgaaatga 15301491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 12676477 - 12676423
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacattaaaaaattat 225  Q
    |||| |||| ||||||||  ||||||||||| ||||||||||||||||| |||||    
T  12676477 taactaagtgcacaatcatagactattttaacatttcgatacattaaaagattat 12676423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 21603649 - 21603603
Alignment:
Q  63 actcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||||||| || |||| ||||||||||| ||||||||||||||||    
T  21603649 actcacaatatctattttgatataaggactaaaatgacaataagtaa 21603603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 41546352 - 41546394
Alignment:
Q  170 ataacgaagtacacaatcaatgactattttaaaatttcgatac 212  Q
    |||| |||||||||||||||  |||||||||||||||||||||    
T  41546352 ataaagaagtacacaatcaaatactattttaaaatttcgatac 41546394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 18636483 - 18636454
Alignment:
Q  184 aatcaatgactattttaaaatttcgataca 213  Q
    ||||||||||||||||||||||||||||||    
T  18636483 aatcaatgactattttaaaatttcgataca 18636454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 28779773 - 28779728
Alignment:
Q  174 cgaagtacacaatcaatgactattttaaaatttcgatacattaaaa 219  Q
    |||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  28779773 cgaagtgcacaatcaaggactattttaaaattttgatacatcaaaa 28779728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 9471803 - 9471867
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacattaaaaaattatcataactatt 235  Q
    |||| ||||||| || |||||||||||||| |||||  ||||||||||||| ||| || ||||||    
T  9471803 taacaaagtacaaaaacaatgactattttagaattttaatacattaaaaaactattatgactatt 9471867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 21602047 - 21602088
Alignment:
Q  69 aataactcttttcatataaggactgaaatgacaataagtaaa 110  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  21602047 aataactcttttcatatagggactgaaatgacaataagtaaa 21602088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 4493200 - 4493141
Alignment:
Q  47 aaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataag 106  Q
    |||||||| ||||||  | |||||||||||||||||||||  ||||||||||||||||||    
T  4493200 aaaataatctttcaatccacacaataactcttttcatatagagactgaaatgacaataag 4493141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 21600498 - 21600452
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacattaa 217  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||||    
T  21600498 taacgaaatgcacaatcaatgactattttaaaattttgatacattaa 21600452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 2988359 - 2988282
Alignment:
Q  28 caaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||||||||||   |||| |||||||| |||||| ||||||||||| |||||| ||||| | |||||||||| |||||    
T  2988359 caaaatagtcattgacgctaaaataatatttcaatactcacaataattctttttatatatgaactgaaatgaaaataa 2988282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 42660040 - 42659995
Alignment:
Q  64 ctcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||    
T  42660040 ctcacaataattcttttcatataaggattaaaatgacaataagtaa 42659995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 21215994 - 21215950
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||||    
T  21215994 taacgaagtgcacaatcaatgactattttgaaatttcaatacatt 21215950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 8491379 - 8491346
Alignment:
Q  192 actattttaaaatttcgatacattaaaaaattat 225  Q
    ||||||||||||||| ||||||||||||||||||    
T  8491379 actattttaaaattttgatacattaaaaaattat 8491346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 23665093 - 23665048
Alignment:
Q  170 ataacgaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    ||||||||||  ||| ||||| ||||||||||||||||||||||||    
T  23665093 ataacgaagtgtacattcaataactattttaaaatttcgatacatt 23665048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 29908984 - 29908943
Alignment:
Q  181 cacaatcaatgactattttaaaatttcgatacattaaaaaat 222  Q
    |||||||||| |||||||||||||||| ||||||| ||||||    
T  29908984 cacaatcaataactattttaaaatttcaatacatttaaaaat 29908943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 3718247 - 3718287
Alignment:
Q  175 gaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    ||||||||||||||| ||| ||||| |||||||||||||||    
T  3718247 gaagtacacaatcaacgacaattttcaaatttcgatacatt 3718287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 13910529 - 13910569
Alignment:
Q  184 aatcaatgactattttaaaatttcgatacattaaaaaatta 224  Q
    |||||||||| |||||||||||| ||||||||||| |||||    
T  13910529 aatcaatgacaattttaaaattttgatacattaaagaatta 13910569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 34949041 - 34949081
Alignment:
Q  65 tcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||||||||||||||| ||||||||| |||| |||||||||    
T  34949041 tcacaataactctttttatataaggattgaattgacaataa 34949081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 44362505 - 44362537
Alignment:
Q  77 ttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||||||||||||| ||||||||||||||||    
T  44362505 ttttcatataaggactaaaatgacaataagtaa 44362537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 12849661 - 12849620
Alignment:
Q  64 ctcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  12849661 ctcacaataactcttttcatatatggactgaaatgacaataa 12849620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 23441549 - 23441505
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||    
T  23441549 taacgaagtgcacaatcaataactattttaaaatttcgatacatt 23441505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 3117080 - 3116991
Alignment:
Q  15 tcactttgataggcaaaatagtcaccaacgcaaaaataatttttcaacactcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||||||| ||| |||||||||| |  |||| ||| |||| |||||| ||||||||||||||||| |||||| ||||| |||||| |||||    
T  3117080 tcactttgctagtcaaaatagtctctgacgctaaa-taatctttcaatactcacaataactctttacatatagggacttaaatgataataa 3116991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 39129206 - 39129160
Alignment:
Q  63 actcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  39129206 actcaccataactcttttaatataagaactgaaatgacaataagtaa 39129160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 23532941 - 23532900
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatac 212  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  23532941 taacgaagtccacaatcaataactattttaaaatttcgatac 23532900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 49078087 - 49078128
Alignment:
Q  64 ctcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  49078087 ctcacaataactcttttcatataaagactaaaatgacaataa 49078128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 23457825 - 23457869
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    |||| |||| |||||||||| ||||||||||||||||||||||||    
T  23457825 taacaaagtgcacaatcaataactattttaaaatttcgatacatt 23457869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 23474603 - 23474559
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||    
T  23474603 taacgaagtgcacaatcaataactattttaaaattttgatacatt 23474559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 32996472 - 32996432
Alignment:
Q  65 tcacaataactcttttcatataaggactgaaatgacaataa 105  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  32996472 tcacactaactcttttcatatatggactgaaatgacaataa 32996432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 1052455 - 1052422
Alignment:
Q  192 actattttaaaatttcgatacattaaaaaattat 225  Q
    ||||||||||||||| ||||||||||||||||||    
T  1052455 actattttaaaattttgatacattaaaaaattat 1052422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 10228796 - 10228752
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    ||||||| | ||||||||| ||||||||| |||||||||||||||    
T  10228796 taacgaattgcacaatcaaagactattttgaaatttcgatacatt 10228752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 39608411 - 39608367
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacatt 215  Q
    ||||||||| ||| |||||||| |||||| |||||||||||||||    
T  39608411 taacgaagtgcacgatcaatgattattttgaaatttcgatacatt 39608367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 27139 - 27085
Alignment:
Q  171 taacgaagtacacaatcaatgactattttaaaatttcgatacattaaaaaattat 225  Q
    ||||||||| ||||||||| || ||||||||||||| |||| ||| |||||||||    
T  27139 taacgaagtgcacaatcaaagattattttaaaattttgataaattgaaaaattat 27085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 29314 - 29360
Alignment:
Q  63 actcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||||||||| |||| |||||| |||| ||||||||||||||||    
T  29314 actcacaataactattttgatataaagactaaaatgacaataagtaa 29360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 109286 - 109324
Alignment:
Q  176 aagtacacaatcaatgactattttaaaatttcgatacat 214  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  109286 aagtgcacattcaatgactattttaaaatttcgatacat 109324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 349064 - 349110
Alignment:
Q  63 actcacaataactcttttcatataaggactgaaatgacaataagtaa 109  Q
    ||||||||||||| |||| |||||| |||| ||||||||||||||||    
T  349064 actcacaataactattttgatataaagactaaaatgacaataagtaa 349110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University