View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_high_15 (Length: 276)
Name: NF17824_high_15
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 609946 - 609682
Alignment:
| Q |
12 |
agagacaaaggatcaaaagaaaaaattttgtcaaaatttgggaggtgagaaaatgagaacaaagagttttccaccaccgttgaagagtatgagaggaaca |
111 |
Q |
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|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
609946 |
agagacaaaggaacaaaagaaaaattcttgtcaaaatttgggaggtgagaaaatgagaacaaagagttttccaccaccgttgaagagtatgagaggatca |
609847 |
T |
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| Q |
112 |
gaatctctaagagtgaaaccgcatagagaaaatggaaggttagtgattgagctaaccaaagttccatcaactgtttcttgcttccaagctgagagaagta |
211 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
609846 |
gaatctataagagtgaaaccacatagagaaaatggaaggttagtgattgagctaaccaaagttccatcaactgtttcttgcttccaagctgagagaagta |
609747 |
T |
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| Q |
212 |
atggaagacttcgtctttctttttggaatgatcccgaagaagatgaaaatcaagggtttgaggac |
276 |
Q |
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| T |
609746 |
atggaagacttcgtctttctttttggaatgatcccgaagaagatgaaaatcaagggtttgaggac |
609682 |
T |
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