View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_high_18 (Length: 239)
Name: NF17824_high_18
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 11635248 - 11635043
Alignment:
| Q |
17 |
aatataagcaattgaaatatatacaagaaaaaagattcttttatcaattattattacttctcaactatgaattcaaggagctcatctgtggcaaaatact |
116 |
Q |
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| T |
11635248 |
aatatacgcaattgaaatatatacaagaaaaaagattcttttatcaattattattacttctcaactatgaattcaaggagctcatctgtggcaaaatact |
11635149 |
T |
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| Q |
117 |
caacagaaatctcttctaaatgaccgcagcttcgttcaacagcataatgacagatctctggcaaatttgcattaaagtaactgcaatcacctatcatgcg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
11635148 |
caacagaaatctcttctaaatgaccgcagcttcgttcaacagcataatgacagatctctgggaaatttgcattaaagtaactgcgttcacctatcatgcg |
11635049 |
T |
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| Q |
217 |
aatggt |
222 |
Q |
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|||||| |
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| T |
11635048 |
aatggt |
11635043 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 29857090 - 29856996
Alignment:
| Q |
69 |
attacttctcaactatgaattcaaggagctcatctgtggcaaaatactcaacagaaatctcttctaaatgaccgcagcttcgttcaacagcataa |
163 |
Q |
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||||||||||| |||||||||||||||| ||||| || || ||||||||| | || ||||| | ||||||||| |||||||||||||||||| |
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| T |
29857090 |
attacttctcagctatgaattcaaggagttcatcagttacagaatactcaatattgatgtcttcaagatgaccgcaacttcgttcaacagcataa |
29856996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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