View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_high_19 (Length: 221)
Name: NF17824_high_19
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 56277282 - 56277473
Alignment:
| Q |
15 |
cagagacgtaatctctcatattctcacacgcgttccggccaagcctttgcttagcatgaaatgcatttccagagggtggaacaacatcatttcaagccgt |
114 |
Q |
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| T |
56277282 |
cagagacgtcatctctcatattctcacacgcgttccggccaaacctttgcttagcatgaaatgcatttccagaggttggaaccacatcatttcaagccgt |
56277381 |
T |
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| Q |
115 |
tcattcatcaaagatcaactcaaaaacactaatcttgttttaaatgcttttattgttcaagataggtacatgttctgcaaacacgatgttaa |
206 |
Q |
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| T |
56277382 |
tcattcatcaaagatcaactcaaaaacacaaatcttgttttaaatggttttattgttcaagataggtacatgttctgcaaacacgatgttaa |
56277473 |
T |
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