View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_high_4 (Length: 426)
Name: NF17824_high_4
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 4 - 426
Target Start/End: Original strand, 8284677 - 8285099
Alignment:
| Q |
4 |
tcgaagaatattggatactctaatgctaatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttc |
103 |
Q |
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| T |
8284677 |
tcgaacaatatcggattctccaatgctaatgatgggatggtggtgttttctaattcacccgcagtctcggtgaaccaaaaccaagttgatgcttattttc |
8284776 |
T |
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| Q |
104 |
gcatccctactgaaaccgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaagtagtgcctaatgccatgacacc |
203 |
Q |
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| T |
8284777 |
aaacccctactggaaccgatttacaactacctacacccccatttttctctttccctgtgcagaatcatattaatgaagtagtgcctaatgccatgacacc |
8284876 |
T |
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| Q |
204 |
accacataggtttaatcacttatctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgta |
303 |
Q |
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| T |
8284877 |
accacataggtttaatcacttatctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgta |
8284976 |
T |
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| Q |
304 |
cctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaa |
403 |
Q |
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| T |
8284977 |
cctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaa |
8285076 |
T |
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| Q |
404 |
tgaatatgattcacatgtaccag |
426 |
Q |
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| T |
8285077 |
tgaatatgattcacatgtaccag |
8285099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 34694753 - 34694959
Alignment:
| Q |
30 |
taatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaaccgatttacaa |
129 |
Q |
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| T |
34694753 |
taatgatgggatggtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaa |
34694852 |
T |
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| Q |
130 |
ctacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgacaccaccacataggtttaatcacttat |
226 |
Q |
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| T |
34694853 |
ctacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccagaggggtttaattacttct |
34694952 |
T |
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| Q |
227 |
ctggttt |
233 |
Q |
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| T |
34694953 |
ctggttt |
34694959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 34686910 - 34687001
Alignment:
| Q |
113 |
ctgaaaccgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgaca |
201 |
Q |
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| T |
34686910 |
ctgaaaccggtctacaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgaca |
34687001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 398
Target Start/End: Original strand, 34694979 - 34695097
Alignment:
| Q |
280 |
ttacctcaacagaatgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatc |
379 |
Q |
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| T |
34694979 |
ttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatc |
34695078 |
T |
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| Q |
380 |
aagagaagattcaagagga |
398 |
Q |
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| T |
34695079 |
aagagaatattcaagagga |
34695097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 34687150 - 34687198
Alignment:
| Q |
377 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtacca |
425 |
Q |
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| T |
34687150 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcacca |
34687198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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