View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_high_5 (Length: 410)
Name: NF17824_high_5
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_high_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 410
Target Start/End: Complemental strand, 48889996 - 48889605
Alignment:
| Q |
20 |
gctacgctacagttgtgggttttaaaaagtttaatgttacgtacatatgtaatttattggcgcgtcaatcaaaaactaggaatcctgacttctgaaattc |
119 |
Q |
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| T |
48889996 |
gctacgctacagttgtgggttttaaaaagtttaatgttacgtacatatgtaatttattggcgcgtcaatcaaaaactaggaatcctgacttctgaaattc |
48889897 |
T |
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| Q |
120 |
acggtaaatatgacactgggacgcagttttaagggttgtg-gtggttttgtgaatgtagaagtgtctgactcaactgtagaatttgtactaagctactac |
218 |
Q |
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| T |
48889896 |
acggtaaatatgacactgggacgcagttttatgggttgtctgtggttttgtgaatgtagaagtgtctgactcaactgtagaatttgtactaagttactac |
48889797 |
T |
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| Q |
219 |
tactttttgctaattgccaaaatctgcatagctgctagcaatgcattctaacttcctgctcaccatttagaaaataataagaagaagcatcttctattac |
318 |
Q |
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| T |
48889796 |
tactttttgctaattgccaaaatctgcatagcttctagcaatgcattctaacttcctgctcaccatttagaaaataataagaagaagcatcttctattac |
48889697 |
T |
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| Q |
319 |
atatatactattaagattatcttgctgtttcaattctatcacacttctgataagcagtttagattatcctacaggaagctgaacatgtgatc |
410 |
Q |
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| T |
48889696 |
atatatactattaagattatcttgctgtttcaattctatcacacttctgataagcagtttagattatcctacaggaagctgaacatgtgatc |
48889605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 49042754 - 49042825
Alignment:
| Q |
342 |
gctgtttcaattctatcacacttctgataagcagtttag---attatcctacaggaagctgaacatgtgatc |
410 |
Q |
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| T |
49042754 |
gctgtttcaattctatcacacttctggtgagcagtttagattattatcctgcaggaagctaaacatgtgatc |
49042825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 15350540 - 15350458
Alignment:
| Q |
89 |
caaaaactaggaatcctgacttctgaaattcacggtaaatatgacactgggacgcagttttaagggttgtggtggttttgtga |
171 |
Q |
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| T |
15350540 |
caaaaactaggaattctgacttctgcaattcatggtaaatatgacattgggacgcggttctaagggttgccatggttttgtga |
15350458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 15350318 - 15350263
Alignment:
| Q |
355 |
tatcacacttctgataagcagtttagattatcctacaggaagctgaacatgtgatc |
410 |
Q |
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| T |
15350318 |
tatcacacttctgataagcacttaagattatccaacaggaagctgaacatgtgatc |
15350263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 18833399 - 18833323
Alignment:
| Q |
96 |
taggaatcctgacttctgaaattcacggtaaatatgacactgggacgcagttttaagggttgtggtggttttgtgaa |
172 |
Q |
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| T |
18833399 |
taggaatactgacttctgaaattcatgacaaatataacattgggacgaggttttaagggttgtcgcgattttgtgaa |
18833323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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