View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_high_7 (Length: 373)
Name: NF17824_high_7
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 41 - 360
Target Start/End: Complemental strand, 16222392 - 16222073
Alignment:
| Q |
41 |
gattaaattatctttcttggtggccctacgaaataataaataagagaataaaagaagnnnnnnnattttagggaagaagaaaagtattttcttgtcatat |
140 |
Q |
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| T |
16222392 |
gattaaattatctttcttggtggccctacgaaataataaataagagaattaaagaagtttttttattttagggaagaataaaagtattttcttgtcatat |
16222293 |
T |
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| Q |
141 |
taactaagagtcaatgttttgtttagcatatttttctttctcaaattatttgtagtttaaattacatagataatgtttattactttcaataccatgatct |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16222292 |
taactaagagtcaatgttttgtttagcatatttttctttctcaaattatttgtagtttaaattacaaagataatgtttattactttcaataccatgatct |
16222193 |
T |
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| Q |
241 |
catttatttaaataatttattattgtctagtttgtattgtaaaatattgcatgatcatttgatatattttagcgcaaattcgaaatcttaattcgtctgt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16222192 |
catttatttaaataatttattattgtctagtttgtattgtaaaatattgcatgatcatttgatatattttagcgcaaattcgaaatcttaattcgtctgt |
16222093 |
T |
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| Q |
341 |
tttcttcatgtagtgtgtga |
360 |
Q |
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|||||||||||||||||||| |
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| T |
16222092 |
tttcttcatgtagtgtgtga |
16222073 |
T |
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