View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_low_1 (Length: 723)
Name: NF17824_low_1
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 27674711 - 27674370
Alignment:
| Q |
14 |
cacagacacaatagcttttattttcttacaaatctctgaactattaaatgacaaaatcacnnnnnnnn-ctataatctatagtaaatggactcttagtct |
112 |
Q |
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| T |
27674711 |
cacagacacaatagcttttattttcttacaaatctctgaactattaaatgaaaaaatcactttttttttctataatctatagtaaatggactcttagtct |
27674612 |
T |
|
| Q |
113 |
ctctttgaagttttgctaaattcctttatgcagaacaaatggaaattttaaagcaaagggaaggaaatgaagaaaggctaacatggggagagatacaaaa |
212 |
Q |
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| T |
27674611 |
ctctttgaagttttgctaaattcctttatgcagaacaaatggaaattttaaagcaaagggaagcaaatgaagaggggctaacatggggagagatacaaaa |
27674512 |
T |
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| Q |
213 |
gatgaaatacacatggagagttgctcaagaattgatgaggatgatccctcccttctttggtgcatttaggaaagcacttaaagatacttgctaccaagga |
312 |
Q |
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| T |
27674511 |
gatgaaatacacatggagagttgctcaagaattgatgaggatgatccctcccttgtttggtgcatttaggaaagcacttaaagatacttgctaccaagga |
27674412 |
T |
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| Q |
313 |
tatgacataccaaaagggtggcaagtaatgtttcttccaaag |
354 |
Q |
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| T |
27674411 |
tatgacataccaaaagggtggcaagtaatgtttcttccaaag |
27674370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 401 - 707
Target Start/End: Complemental strand, 27674321 - 27674015
Alignment:
| Q |
401 |
gggctaacattaatgtcaaattggtattttgtttaggtatattgggcatcaagtggaacacatgagaacaaagatatatttgagaatccatacaagtttg |
500 |
Q |
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| T |
27674321 |
gggctaacattaatgtcaaattggtttcttgtttaggtatattgggcatcaagtggaacacatgagaacaaagatatatttgagaatccatacaagtttg |
27674222 |
T |
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| Q |
501 |
aaccatctcgttttgaaaatcaaaccaagccatatccaccctttacttaccttgcatttggtgcagggcttcataattgcataggaaatgagtttgctag |
600 |
Q |
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| T |
27674221 |
aaccatctcgttttgaaaatcaaaccaagccaattccaccctttacttaccttccatttggtgcagggcttcataattgcataggaaatgagtttgctag |
27674122 |
T |
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| Q |
601 |
ggttgagacattaactaccattcacaattttgtgcagatgtgtgaatggtctcaattgaatcctgaggaaactattactcgtcaacctatgccatatcct |
700 |
Q |
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| T |
27674121 |
ggttgagacattaactaccattcacaattttgtgaagatgtgtgaatggtctcaattgaatcctgaggaaactattactcgtcaacctatgccatatcct |
27674022 |
T |
|
| Q |
701 |
tccttag |
707 |
Q |
| |
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||||||| |
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| T |
27674021 |
tccttag |
27674015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 432 - 705
Target Start/End: Original strand, 27672051 - 27672324
Alignment:
| Q |
432 |
tttaggtatattgggcatcaagtggaacacatgagaacaaagatatatttgagaatccatacaagtttgaaccatctcgttttgaaaatcaaaccaagcc |
531 |
Q |
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|||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||| | |||||||| ||||||||||||||||||| ||||||| | |
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| T |
27672051 |
tttaggtatattgggcatcatgtggaactcatatgaacaaagatatattcgagaatcctgaaaagtttgatccatctcgttttgaaaatcgaaccaagtc |
27672150 |
T |
|
| Q |
532 |
atatccaccctttacttaccttgcatttggtgcagggcttcataattgcataggaaatgagtttgctagggttgagacattaactaccattcacaatttt |
631 |
Q |
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| |||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| | || ||||| || |||||||||||| |
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| T |
27672151 |
aattccacccttttcttacatcccatttggtgcagggcttcactattgcataggaaatgagtttgctagggttcaaaccttaaccactattcacaatttt |
27672250 |
T |
|
| Q |
632 |
gtgcagatgtgtgaatggtctcaattgaatcctgaggaaactattactcgtcaacctatgccatatccttcctt |
705 |
Q |
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| T |
27672251 |
gtgaagacatatgaatggtctcaaatgaacctagaggaaacaattactcgtcgaccaatgccatatccatcctt |
27672324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 125 - 335
Target Start/End: Original strand, 27671627 - 27671837
Alignment:
| Q |
125 |
ttgctaaattcctttatgcagaacaaatggaaattttaaagcaaagggaaggaaatgaagaaaggctaacatggggagagatacaaaagatgaaatacac |
224 |
Q |
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||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
27671627 |
ttgctaaatacttttatgcagaacaaatggaaatcataaagcaaagggaaggaaatgaagacaggctaacatggggagagatacaaaatatgaaatacac |
27671726 |
T |
|
| Q |
225 |
atggagagttgctcaagaattgatgaggatgatccctcccttctttggtgcatttaggaaagcacttaaagatacttgctaccaaggatatgacatacca |
324 |
Q |
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| T |
27671727 |
atggagagttgctcaggagttgatgagaatgatccctcctttgtttggggcctttaggaaaacaatcgaagatactaattacgaaggatatgacatacca |
27671826 |
T |
|
| Q |
325 |
aaagggtggca |
335 |
Q |
| |
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||||||||||| |
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| T |
27671827 |
aaagggtggca |
27671837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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