View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_low_11 (Length: 318)
Name: NF17824_low_11
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 1324854 - 1325159
Alignment:
| Q |
1 |
gggtcaattgggtctattttttctatcattacaaccttgaactaaggccgagaagaca----------gaatgtacttgaattatatatacaatcccaca |
90 |
Q |
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| T |
1324854 |
gggtcaattgggtctatttttt-tatcattacaaccttgaactaaggccgagaagacaaaagaagacagaatgtactagaattataca---aatcccaca |
1324949 |
T |
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| Q |
91 |
accccaaaaaagaaaataatac-----tatttctgtaacagcacgggtacatcggccatcataagaaaatgcaatagatgcacaccaatggcaataatag |
185 |
Q |
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| T |
1324950 |
accccaaaaaagaaaataatacagtactatttctgtaacagcacgggtacatcggccatcataagaaaatgcaatagatgcacaccaat------aatag |
1325043 |
T |
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| Q |
186 |
tgaatgcatgcacaaagttgggtatttaaaaactcaccacttgtgatgcacagaagataagatcatattaattcacatttatcattcaacttgctactat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
1325044 |
tgaatgcatgcacaaagttgggtatttaaaaactcaccacttgtgatgcacagaaaataaggtcatattaattcacatttatcattcaacttggtactat |
1325143 |
T |
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| Q |
286 |
ttttgtttggtactct |
301 |
Q |
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|||||||||||||||| |
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| T |
1325144 |
ttttgtttggtactct |
1325159 |
T |
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