View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_low_19 (Length: 250)
Name: NF17824_low_19
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 11635492 - 11635257
Alignment:
| Q |
16 |
atgagagatttaaaaagacggcaagatcggccaaggacttcaagagactccttcgataggctacataatgaaatctctaactcctctaactgcaaa-gtt |
114 |
Q |
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| T |
11635492 |
atgagagattttaaaagacggcaagatcggccaaggacttcaagagactccttcgataggctacataatgaaatctctaactcctctaactgcaaaagtt |
11635393 |
T |
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| Q |
115 |
ttctcacagctttgcaaaatccttcatctgaaatgtattggcattctacaagccgcatgcatctcagattagtgccactgcaaatgcataaagccatcat |
214 |
Q |
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| T |
11635392 |
ttctcacagctttgcaaaatccttcatctgaaatgtattggcattctacaagccgcatgcatctcagattagtgccactgcaaatgcataaagccatcat |
11635293 |
T |
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| Q |
215 |
taagcagcataaaaatttagaaaataaatcatggat |
250 |
Q |
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| T |
11635292 |
taagcagcataaaaatttagaaaataaatcatggat |
11635257 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 5568994 - 5569051
Alignment:
| Q |
18 |
gagagatttaaaaagacggcaagatcggccaaggacttcaagagactccttcgatagg |
75 |
Q |
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| T |
5568994 |
gagagattttaaactagggcaagatcggcctaggacttcaagagaatcctttgatagg |
5569051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 5573975 - 5574032
Alignment:
| Q |
18 |
gagagatttaaaaagacggcaagatcggccaaggacttcaagagactccttcgatagg |
75 |
Q |
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| T |
5573975 |
gagagattttaaactagggcaagatcggcctaggacttcaagagaatcctttgatagg |
5574032 |
T |
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