View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_low_2 (Length: 524)
Name: NF17824_low_2
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 51539046 - 51539554
Alignment:
| Q |
1 |
atataaaacagtattgcactttttacaggaaacacaaaccggaggctcacataatatgtctcctttttctctcagctcttatcgggtatgaattcttggg |
100 |
Q |
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| T |
51539046 |
atataaaacagtattgcactttttacaggaaacacaaaccggaggctcacataatatgtctcctttttctctcagctcttatcgggtatgaattcttggg |
51539145 |
T |
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| Q |
101 |
accatagaacaaaattctagttctgtactaatannnnnnnaactgtcataactgtagttattgactaaactttttcagtgtaacactcccccaatatttg |
200 |
Q |
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| T |
51539146 |
accatagaataaaattctagttctgtactaatatttttttaactgtcataactgtagttattgactaaactttttcagtgtaacactcccccaatatttg |
51539245 |
T |
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| Q |
201 |
tttcttcttggacttgagtatacatctgccacattctcttgtgcattcctcaacatggtgcctgtatttacgttcatcatgtcacttccatttgggtaag |
300 |
Q |
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| T |
51539246 |
tttcttcttggacttgagtatacatctgccacattctcttgtgcattcctcaacatggtgcctgtatttacgttcatcatgtcacttccatttgggtaag |
51539345 |
T |
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| Q |
301 |
ttagttaaacaaaaagatatatacatgtccgtaattacttgattgtggaatataactacaataacttttatttatttaccttttggtttgaaaattttct |
400 |
Q |
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| T |
51539346 |
ttagttaaacaaaaagatatatacatgtccgtaattacttgattgtggaatataactacaataacttttatttatttaccttttggtttgaaaattttct |
51539445 |
T |
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| Q |
401 |
aggatagagaaggtgaacatgaaaagcaagagtggcaaagccaaaatcttgggaactattgtgtgcattggtggagttttgttattagccctttataaag |
500 |
Q |
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| T |
51539446 |
aggatagagaaggtgaacatgaaaagcaagagtggcaaagccaaaatcttgggaactattgtgtgcattggtggagttttgttattagccctttataaag |
51539545 |
T |
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| Q |
501 |
gaatttcct |
509 |
Q |
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| T |
51539546 |
gaatttcct |
51539554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 418 - 504
Target Start/End: Original strand, 14212505 - 14212591
Alignment:
| Q |
418 |
catgaaaagcaagagtggcaaagccaaaatcttgggaactattgtgtgcattggtggagttttgttattagccctttataaaggaat |
504 |
Q |
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| T |
14212505 |
catgaaaagcaagagtggtaaagccaaaatcttgggaacttttgtgtgtattggtggagctttggtattggtcctttataaaggaat |
14212591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 14211391 - 14211465
Alignment:
| Q |
203 |
tcttcttggacttgagtatacatctgccacattctcttgtgcattcctcaacatggtgcctgtatttacgttcat |
277 |
Q |
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| T |
14211391 |
tcttgttggacttaaatatacatcagcaacattcgcatctgcattcctcaatacggtgcctgtattcacgttcat |
14211465 |
T |
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