View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_low_3 (Length: 518)
Name: NF17824_low_3
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_low_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 37462718 - 37462220
Alignment:
| Q |
19 |
aaagattcattaattacctcgacgcattttctaaaagcaaaatcaagaccccatccatgaacaaattcattctgcaaaaaccataattgtgttacaatca |
118 |
Q |
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| T |
37462718 |
aaagattcattaattacctcgacgcattttctaaaagcaaaatcaagaccccatccatgaacaaattcattctgcaaaaaccattattgtgttacaatca |
37462619 |
T |
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| Q |
119 |
taatttattggaagccatcataaacaactaatggataatatttttaaggacaatgtaaagatattttacactgtaaatcaatcatatccattaggttatt |
218 |
Q |
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| T |
37462618 |
taatttattggaagccatcataaacaactaatggataatatttttaaggacaatgtaaagatattttacaccgtaaatcaatcatatccattagattatt |
37462519 |
T |
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| Q |
219 |
aaaacatttgactttattcatgattccttttaaagagtaagcatggaacctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagc |
318 |
Q |
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| T |
37462518 |
aaa-catttgactttattcatgattccttttaaagagtaagcatggaacctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagc |
37462420 |
T |
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| Q |
319 |
cataatctcgacaaatgctgcacaaggaggaagaagagggtatttacacttccctggtttctcttgtgtttgtctaatagaaaaaccaaacaaataaaca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37462419 |
cataatctcgacaaatgctgcacaaggaggaagaagagggtatttacacttccctggtttctcttgtgcttgtctaatagaaaaaccaaacaaataaaca |
37462320 |
T |
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| Q |
419 |
gtcaaaaacacataaactcattctttcacaatcataacacacaccacaagaaaattgtgacttatcattagttcttacttgtgcacttcactatcatttc |
518 |
Q |
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| T |
37462319 |
gtcaaaaaaacataaactcattctttcacaatcataacacacaccacaagaaaattgtgacttatcattagttcttacttgtgcacttcactatcatttc |
37462220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 37456779 - 37456711
Alignment:
| Q |
265 |
aacctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaa |
333 |
Q |
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| T |
37456779 |
aacctgaatcatatgccacacgcagcgccatgcttcacgtgaaaacactggagccataatctcaacaaa |
37456711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 39263195 - 39263127
Alignment:
| Q |
265 |
aacctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaa |
333 |
Q |
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| T |
39263195 |
aacctgaatcatatgccacacacaacgccatgcttctcgcgagaatactggagccataatctcaacaaa |
39263127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 11893378 - 11893309
Alignment:
| Q |
265 |
aacctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaat |
334 |
Q |
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|||||| ||||| ||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||| |
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| T |
11893378 |
aacctgtatcatatgccacacacaacgccatgaatctctggaaaatacaggagccatgatctcaacaaat |
11893309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 40419265 - 40419333
Alignment:
| Q |
266 |
acctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaat |
334 |
Q |
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||||||| ||| |||||||||||||||||||| || || |||||| |||| |||||||| || |||||| |
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| T |
40419265 |
acctgaagcatatgccacacacaacgccatgcttcccgagaaaaagcaggggccataatttccacaaat |
40419333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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