View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17824_low_6 (Length: 396)
Name: NF17824_low_6
Description: NF17824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17824_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 9 - 366
Target Start/End: Original strand, 45414369 - 45414719
Alignment:
| Q |
9 |
agcataggttgattattgaa-gtgaaaaagatgcaaaggcacgccacgtgacatttagaagagaaggacaccaac-atcaatcatgagaattagtatagt |
106 |
Q |
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| T |
45414369 |
agcatagattgattattgaaagtgaaaaagatgcaaaggcatgccacgtgacatttagaagagaaggacaccaacaatcaatcatgagaattagtatagt |
45414468 |
T |
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| Q |
107 |
tgcatcatcaggacacactactaataaagtaaccacaacttcaatttaatttaattagtacaattaattaacaacaaataaaaatatataaagacgtagg |
206 |
Q |
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| T |
45414469 |
tg---catcaggacacactactaataaagtaaccaccacttcaattt--------------aattaattaacaacaaataaaaatatataaagacgtagg |
45414551 |
T |
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| Q |
207 |
t----gacagacagagttgtgtgaaa-cgtttgatttgattcgtaccgatgggcgtttgtgtttggcta---atcatcaatcatcatcannnnnnnnnnn |
298 |
Q |
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| T |
45414552 |
tgacagacagacagagttgtgtgaaaccgtttgatttgattcgtaccgatgggcgtttgtgtttggctaatcatcatcaatcatcatcatcctcctcctc |
45414651 |
T |
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| Q |
299 |
nnnnnnnnaactgaatttccaattttcttcattcatccgtacacgtgtctctttctttctttctttct |
366 |
Q |
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| T |
45414652 |
ctccctccgactgaatttccaattttcttcattcatccgtacacgtgtctctttctttctttctttct |
45414719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 45414709 - 45414741
Alignment:
| Q |
348 |
tctttctttctttctttctgatcaattgatttg |
380 |
Q |
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| T |
45414709 |
tctttctttctttctttctgatcaattgatttg |
45414741 |
T |
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