View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17825_high_2 (Length: 379)
Name: NF17825_high_2
Description: NF17825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17825_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 30687623 - 30687959
Alignment:
| Q |
12 |
cagaactaaccaatatcctttgaaaggttgctgataagttcttgaattccttcttttcccaaagtgtccttcagatacatagcagcggatacaacctcct |
111 |
Q |
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| T |
30687623 |
cagaactaaccaatatcttttgaaaggttgctgataagttcttgaattccttcttttcccaaagtgtccttcagatacatagcagcggatacaacctcct |
30687722 |
T |
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| Q |
112 |
caggcgtgactttcccatcataatccctgccagaacatggccaaacatttgaatgacaattatttccaacaattacctatgacaattaatgagggaaaag |
211 |
Q |
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| T |
30687723 |
caggcgtcactttcccatcataatccctgccagaacatggccaaacatttcaatgacaattatttccaacaattacctatgacgattaatgagggaaaag |
30687822 |
T |
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| Q |
212 |
aaacaaataaccgtatccgtgtcatgatgctttgtaaaactttacgcgtttgaaatgtattgaatgtccttggaacatgtcactaataaaacataatagt |
311 |
Q |
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| T |
30687823 |
aaacaaataaccgtatccgtgtcatgatgctttgtaaaactttacacgtttgaaatgtattgaatgtccttggaacatgtcactaataaaacataatagt |
30687922 |
T |
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| Q |
312 |
aattaattcgttacatgattccccttataaaagccat |
348 |
Q |
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| T |
30687923 |
aattaattcattacatgattccccttataaaagccat |
30687959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 36745354 - 36745457
Alignment:
| Q |
33 |
gaaaggttgctgataagttcttgaattccttcttttcccaaagtgtccttcagatacatagcagcggatacaacctcctcaggcgtgactttcccatcat |
132 |
Q |
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| T |
36745354 |
gaaagattgctgacgagttcttggacgccttctttccccaatgtattcttcaagtacattgcagccgatgctacctcctcaggagttactttcccatcat |
36745453 |
T |
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| Q |
133 |
aatc |
136 |
Q |
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|||| |
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| T |
36745454 |
aatc |
36745457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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