View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17825_low_1 (Length: 676)

Name: NF17825_low_1
Description: NF17825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17825_low_1
NF17825_low_1
[»] chr5 (1 HSPs)
chr5 (19-656)||(15632565-15633185)


Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 19 - 656
Target Start/End: Complemental strand, 15633185 - 15632565
Alignment:
Q  19 attagactttggttgcctgtttgtttggggatgctcgaccgaggtgaaactttgttagatgttttagttttttaaataatctcgggacttccgatcagtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15633185 attagactttggttgcctgtttgtttggggatgctcgaccgaggtgaaactttgttagatgttttagttttttaaataatctcgggacttccgatcagtg 15633086  T
Q  119 aattatgtcccattgttagaaatcacgagggatgttgctcaaaacctggcgagtatgtttattttgaagaaagaacatgctccatatgttcttcgccgtg 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |   ||     |||||||||||||||    
T  15633085 aattatgtcacattgttagaaatcacgagggatgttgctcaaaaccttgcgggtatgtttattttgaagaaaggaa--gc-----atgttcttcgccgtg 15632993  T
Q  219 atctttgttagggcttctgtttccatccacttcgtcgaacaatccactgcgaccaccaggtagttgacttgtcccatagctttggggaatggtcccaata 318  Q
    ||||||||||||| |||                |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15632992 atctttgttagggattc----------------gtcgaataatccactacgaccaccaggtagttgacttgtcccatagctttggggaatggtcccgata 15632909  T
Q  319 gatcgattccacaccaagagaacggccatggtgaagcgaatgacattaactcggttggaggagctatgtgcatgtccccatgtttctggaatctgtggca 418  Q
    || |||||||||||||||  |||||||||||||||||||||||  ||||||| | ||||||||||||||||||||||| |||||||||||||||||||||    
T  15632908 gaccgattccacaccaagcaaacggccatggtgaagcgaatgatgttaactcagctggaggagctatgtgcatgtccctatgtttctggaatctgtggca 15632809  T
Q  419 ttacataaacccaaaccattaccatcataaattagtcaaatattggataaattactagggcaatacaaaccaagctgcatatactgatataccaca---- 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||        
T  15632808 ttacataaacccaaaccattaccatcataaattagtcaaatattggataaattactagggcaatacaaaccaagcagcatatactgatataccacagaca 15632709  T
Q  515 --gacaggatgcccgactccgaccaatctccctcccttgctctcatcgacgcataccctcaaataactccctctcatgctctcctcgtcctcgacaccct 612  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15632708 cagacaggatgcccgactccgaccaatctccctcccttgctctcatcgacgcatagcctcaaataactccctctcatgctctcctcgtcctcgacaccct 15632609  T
Q  613 cttaatcaagatcttcgatgtctacttctttactgaagcttgta 656  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  15632608 cttaatcaagatcttcgatgtctacttctttactggagcttgta 15632565  T

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