View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17825_low_3 (Length: 383)
Name: NF17825_low_3
Description: NF17825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17825_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 24447239 - 24447457
Alignment:
| Q |
17 |
aagcagtaacaccatcacggtggtgacggagaatcttaggagcggcagaaggaagaagagggttatgaattgagacggagacatcggaagaggaggcggt |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
24447239 |
aagcagtaacaccatcacggtggtgacggagaatcttaggagcggtagaaggaagaagagggttatgaatcgagacggagacatcggaagaggaagcggt |
24447338 |
T |
|
| Q |
117 |
gacgaggtgttcggctttctggtcccatacgagcgagcagaaggaagcacggccgcctttttgggtgtgggcctccctcattttcattaatcggaccttc |
216 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24447339 |
gacgagatgttcggctttctggtcccatacgagtgagcagaaggaagcacggccgcctttttgggtgtgggcctccctcattttcattaatcggaccttc |
24447438 |
T |
|
| Q |
217 |
atgatggtttcgaaatgag |
235 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
24447439 |
atgatggtttcgaaatgag |
24447457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 38839797 - 38839655
Alignment:
| Q |
17 |
aagcagtaacaccatcacggtggtgacggagaatcttaggagcggcagaaggaagaagagggttatgaattgagacggagacatcggaagaggaggcggt |
116 |
Q |
| |
|
||||||||||||| |||||||| |||| ||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||| |
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|
| T |
38839797 |
aagcagtaacaccgtcacggtgatgacagagaatcttgggagcagcagaaggaagaagagggttatgaatcgagatggagacatcagaagaggaagcggt |
38839698 |
T |
|
| Q |
117 |
gacgaggtgttcggctttctggtcccatacgagcgagcagaag |
159 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
38839697 |
gacgagatgttcggctttctggtcccatacgagcgagcagaag |
38839655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 372
Target Start/End: Complemental strand, 8567240 - 8567102
Alignment:
| Q |
234 |
agcagaactaacagtgtaagaagtagaatcatgtaatgtccatatccaactatctgcacggtcaccctgaaaagagaaattagatagacgactaatacaa |
333 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| |||||||||| |||| || ||||| |||||||||||||||| | ||| ||| |||||| |
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|
| T |
8567240 |
agcagaactaacagtgtaacaattagaatcatgtaacatccatatccatctattgacatggtcaacctgaaaagagaaatttgttaggcgaacaatacac |
8567141 |
T |
|
| Q |
334 |
gcccccaacaactcctcctcccatgcgaaaagtctccta |
372 |
Q |
| |
|
||||||| |||| ||||||||| || ||||| |||||| |
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| T |
8567140 |
tcccccaataacttctcctcccacgcaaaaagcctccta |
8567102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 372
Target Start/End: Complemental strand, 6519827 - 6519693
Alignment:
| Q |
238 |
gaactaacagtgtaagaagtagaatcatgtaatgtccatatccaactatctgcacggtcaccctgaaaagagaaattagatagacgactaatacaagccc |
337 |
Q |
| |
|
||||||||||||||| || || |||||||||| |||||||||| ||||| ||||||| ||| |||||||||||| | ||| ||| |||||| ||| |
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|
| T |
6519827 |
gaactaacagtgtaacaattaaaatcatgtaacatccatatccatctatcgacacggtccacctaaaaagagaaatttgttaggcgaacaatacactccc |
6519728 |
T |
|
| Q |
338 |
ccaacaactcctcctcccatgcgaaaagtctccta |
372 |
Q |
| |
|
|||| |||||||||||||| || ||||| |||||| |
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|
| T |
6519727 |
ccaataactcctcctcccacgcaaaaagcctccta |
6519693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 12352622 - 12352412
Alignment:
| Q |
17 |
aagcagtaacaccatcacggtggtgacggagaatcttaggagcggcagaaggaagaagagggttatgaattgagacggagacatcggaagaggaggcggt |
116 |
Q |
| |
|
||||||||||||| |||| ||| |||| ||||||||| |||| |||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |
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|
| T |
12352622 |
aagcagtaacaccgtcaccgtgatgacagagaatcttgagagcagcagaaggaagaagagggttatgaatcgagatggagacatcggaagaggaagcggt |
12352523 |
T |
|
| Q |
117 |
gacgaggtgttcggctttctggtcccatacgagcgagcagaaggaagcacggccgcc-tttttgggtgtgggcctccctcattttcattaatcggacctt |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12352522 |
gacgagatgttcggctttctggtcccatacgagcgagcagaaggaagcacgaccgccttttttgggtgtgggcctccctcattttcattaatcggacctt |
12352423 |
T |
|
| Q |
216 |
catgatggttt |
226 |
Q |
| |
|
||||||||||| |
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|
| T |
12352422 |
catgatggttt |
12352412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 234 - 372
Target Start/End: Original strand, 14489877 - 14490015
Alignment:
| Q |
234 |
agcagaactaacagtgtaagaagtagaatcatgtaatgtccatatccaactatctgcacggtcaccctgaaaagagaaattagatagacgactaatacaa |
333 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
14489877 |
agcagaactaacagtgtaacaattagaatcatgtaatgtccaaatccaacaatctgcacggacaccctgaaaagagaaattagatagacgactaatacac |
14489976 |
T |
|
| Q |
334 |
gcccccaacaactcctcctcccatgcgaaaagtctccta |
372 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14489977 |
tcccccaacaactcctcctcccacgcgaaaagtctccta |
14490015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 237 - 372
Target Start/End: Original strand, 9555833 - 9555968
Alignment:
| Q |
237 |
agaactaacagtgtaagaagtagaatcatgtaatgtccatatccaactatctgcacggtcaccctgaaaagagaaattagatagacgactaatacaagcc |
336 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9555833 |
agaactaacagtgtaacaattagaatcatgtaatgtccaaatccaactatctgcacggttaccctgaaaagagaaattagatagacgactaatacaatcc |
9555932 |
T |
|
| Q |
337 |
cccaacaactcctcctcccatgcgaaaagtctccta |
372 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9555933 |
cccaacaactcctcctcccacgcgaaaagtctccta |
9555968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 14791353 - 14791415
Alignment:
| Q |
294 |
gtcaccctgaaaagagaaattagatagacgactaatacaagcccccaacaactcctcctccca |
356 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| ||||||| || |||||||||||| |||||| |
|
|
| T |
14791353 |
gtcaacctgaaaagagaagttagatagacgaataatacactcctccaacaactccttctccca |
14791415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 234 - 372
Target Start/End: Complemental strand, 32003539 - 32003401
Alignment:
| Q |
234 |
agcagaactaacagtgtaagaagtagaatcatgtaatgtccatatccaactatctgcacggtcaccctgaaaagagaaattagatagacgactaatacaa |
333 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
32003539 |
agcagaactaacaatgtaacaattagaatcatgtaatgtccaaatccaactatctgcgcggtcatcctgaaaagagaaattagatagacgactaatacaa |
32003440 |
T |
|
| Q |
334 |
gcccccaacaactcctcctcccatgcgaaaagtctccta |
372 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32003439 |
tcccccaacaactcctcctcccacgcgaaaagtctccta |
32003401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 234 - 372
Target Start/End: Original strand, 478320 - 478458
Alignment:
| Q |
234 |
agcagaactaacagtgtaagaagtagaatcatgtaatgtccatatccaactatctgcacggtcaccctgaaaagagaaattagatagacgactaatacaa |
333 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| ||| |||||||| |
|
|
| T |
478320 |
agcagaactaacagtataacaattagaatcatgtaaagtccaaatccaactatctgcgcggtcaccttgaaaagagaaattagataggcgattaatacaa |
478419 |
T |
|
| Q |
334 |
gcccccaacaactcctcctcccatgcgaaaagtctccta |
372 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
478420 |
tcccccaacaactcctcctcccacgcgaaaagtctccta |
478458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 234 - 366
Target Start/End: Complemental strand, 15830549 - 15830417
Alignment:
| Q |
234 |
agcagaactaacagtgtaagaagtagaatcatgtaatgtccatatccaactatctgcacggtcaccctgaaaagagaaattagatagacgactaatacaa |
333 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
15830549 |
agcagaactaacagtgtaacaagaagaatcatgtaatgtccaaatccaactatatgcacggtcaccctgaaaagagaaattagatatacgagtaatacaa |
15830450 |
T |
|
| Q |
334 |
gcccccaacaactcctcctcccatgcgaaaagt |
366 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |
|
|
| T |
15830449 |
tcccccaacaaaccctcctcccacgcgaaaagt |
15830417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 234 - 372
Target Start/End: Complemental strand, 34372935 - 34372795
Alignment:
| Q |
234 |
agcagaactaacagtgtaagaagtagaatcatgtaatgtccatatccaactatctgcacggtcaccctgaaaagagaaattag--atagacgactaatac |
331 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
34372935 |
agcataactaacagtgtaacaattagaatcatgtaatgtccaaatccaactatctgcaccgtcaccctaaaaagagaaattagatatagacgactaatac |
34372836 |
T |
|
| Q |
332 |
aagcccccaacaactcctcctcccatgcgaaaagtctccta |
372 |
Q |
| |
|
|| || |||||||||||||||||| ||||||||||||||| |
|
|
| T |
34372835 |
aatccaacaacaactcctcctcccacgcgaaaagtctccta |
34372795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 12414237 - 12414303
Alignment:
| Q |
290 |
cacggtcaccctgaaaagagaaattagatagacgactaatacaagcccccaacaactcctcctccca |
356 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||| ||||||| ||| |||||||||| ||||||| |
|
|
| T |
12414237 |
cacggtcaacctgaaaagagaagttagataggcgaataatacactccctcaacaactccacctccca |
12414303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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