View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17825_low_5 (Length: 356)
Name: NF17825_low_5
Description: NF17825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17825_low_5 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 11831897 - 11832247
Alignment:
| Q |
7 |
gagatgaatttaaagacaaaaatagccacaagatttggtgaagacacacaaactccacgaccccacctatcacgcatgcatactacatatatttgcatct |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11831897 |
gagaagaatttaaagacaaaaatagccacaagatttggtgaagacacacaaactccacgaccccacctatcacgcatgcatactacatatatttgcatct |
11831996 |
T |
|
| Q |
107 |
agatcctctcctgtgttgtcctcttcacta-tcaagtcttatttttctttactatactctttagataagaagattgaagacggtccaagtatttgccata |
205 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
11831997 |
ggatcctctcctgtgtagtcctcttcactaatcaagtcttatttttctttactatactctttaggttagaagattgaagacggtccaagtatttgccata |
11832096 |
T |
|
| Q |
206 |
cagtgcattaaatgagtatcaaataattctatttgagaggattttactttcatgaattcagtttgaaacctttcatgcagcagaatactcggagcttgtt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11832097 |
cagtgcattaaatgagtatcaaataattctatttgagaggattttactttcatgaatttagtttgaaacctttcatgcagcagaatactcggagcttgtt |
11832196 |
T |
|
| Q |
306 |
aaattttctatttgtcgaagcgtaactaataccgacaataataatgatcaa |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11832197 |
aaattttctatttgtcgaagcgtaactaataccgacaataataatgatcaa |
11832247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University