View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17825_low_8 (Length: 236)
Name: NF17825_low_8
Description: NF17825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17825_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 48899092 - 48899300
Alignment:
| Q |
14 |
aacctgtgccagtcaaaattcaagagtggccacttttgtagaattaccctcctcttgacaccaaaagggcacaacagtgaaaacccatctggatattgtc |
113 |
Q |
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| T |
48899092 |
aacctgtgccagtcaaaattcaagagtggccacttttgtagaagtaccctcctcttgacaccaaaagggcacaacagtgaaaacccatctggatattgtc |
48899191 |
T |
|
| Q |
114 |
tttcaactgattgaagagactatttctgaatcaatagttgaaagttttatgaaactggtgctatttgtagaaaattatnnnnnnngtagcaaataataac |
213 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48899192 |
tttcaactgattgaagagactatttcagaatcaatagttgaaagttttatgaaactggtgctatttgtagaaaattataaaaaaagtagcaaataataac |
48899291 |
T |
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| Q |
214 |
agcaccctg |
222 |
Q |
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||||||||| |
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| T |
48899292 |
agcaccctg |
48899300 |
T |
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